RNA–Protein interactions for RNA: ENST00000333496.14

CLN3-201, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,608 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-201ENST00000333496 MTSS1LQ765P7 747 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 ITIH5Q86UX2 942 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 TRIML1Q8N9V2 468 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 MYCBPAPQ8TBZ2 947 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 FAM200AQ8TCP9 573 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 SEMA4DQ92854 862 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 KXD1Q9BQD3 176 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 PLA2G2FQ9BZM2 168 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 CTNND2Q9UQB3 1225 aa16.89■□□□□ 0.29
CLN3-201ENST00000333496 A8MXQ7 604 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 PTPN1P18031 435 aaKnown RBP16.88■□□□□ 0.29
CLN3-201ENST00000333496 BDNFP23560 247 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 FCARP24071 287 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 GABRR2P28476 465 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 ASPAP45381 313 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 VEPH1Q14D04 833 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 MDH1BQ5I0G3 518 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 FAM78AQ5JUQ0 283 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 STXBP5Q5T5C0 1151 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 TANGO2Q6ICL3 276 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 C4orf50Q6ZRC1 276 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 PBXIP1Q96AQ6 731 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 ASB16Q96NS5 453 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 CLSTN2Q9H4D0 955 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 MAGEC2Q9UBF1 373 aaPredicted RBP16.88■□□□□ 0.29
CLN3-201ENST00000333496 GOLGA6L22H0YM25 854 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 CLSTN1O94985 981 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 SRFP11831 508 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 MAGEA11P43364 429 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 MXI1P50539 228 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 STX17P56962 302 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 NOP14P78316 857 aaKnown RBP16.88■□□□□ 0.29
CLN3-201ENST00000333496 MAPRE1Q15691 268 aaKnown RBP16.88■□□□□ 0.29
CLN3-201ENST00000333496 CBWD6Q4V339 395 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 CBWD3Q5JTY5 395 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 CBWD5Q5RIA9 395 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 FILIP1Q7Z7B0 1213 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 TMEM150AQ86TG1 271 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 B3GALNT2Q8NCR0 500 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 SLC35C1Q96A29 364 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 CEP63Q96MT8 703 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 BCO2Q9BYV7 579 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 TMEM30AQ9NV96 361 aa16.88■□□□□ 0.29
CLN3-201ENST00000333496 ECI2O75521 394 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 CFHP08603 1231 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 P4HA1P13674 534 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 PTMSP20962 102 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 RPL10AP62906 217 aaKnown RBP16.87■□□□□ 0.29
CLN3-201ENST00000333496 CYP27A1Q02318 531 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 PAK1Q13153 545 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 DCAF17Q5H9S7 520 aaPredicted RBP16.87■□□□□ 0.29
CLN3-201ENST00000333496 TCERG1LQ5VWI1 586 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 MED15Q96RN5 788 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 ATXN3LQ9H3M9 355 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 HMGXB4Q9UGU5 601 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 ARMCX3Q9UH62 379 aaPredicted RBP16.87■□□□□ 0.29
CLN3-201ENST00000333496 RAPGEFL1Q9UHV5 662 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 NCANO14594 1321 aa16.87■□□□□ 0.29
CLN3-201ENST00000333496 TICRRQ7Z2Z1 1910 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 BICDL2A1A5D9 508 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 CLDN5O00501 218 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 F11P03951 625 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 CSH1P0DML2 217 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 CSH2P0DML3 217 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 COL9A1P20849 921 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 CACNA2D1P54289 1103 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 GPC5P78333 572 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 CYP4F8P98187 520 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 VSTM1Q6UX27 236 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 FRMD5Q7Z6J6 570 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 SCN4BQ8IWT1 228 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 FBXL13Q8NEE6 735 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 ZSCAN18Q8TBC5 510 aaPredicted RBP16.86■□□□□ 0.29
CLN3-201ENST00000333496 SMARCD2Q92925 531 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 ELSPBP1Q96BH3 223 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 B3GNT5Q9BYG0 378 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 IMPG2Q9BZV3 1241 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 SLC2A4RGQ9NR83 387 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 RAB20Q9NX57 234 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 MAGED2Q9UNF1 606 aaPredicted RBP16.86■□□□□ 0.29
CLN3-201ENST00000333496 COQ4Q9Y3A0 265 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 COL4A3Q01955 1670 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 PATJQ8NI35 1801 aa16.86■□□□□ 0.29
CLN3-201ENST00000333496 SLC38A8A6NNN8 435 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 STX10O60499 249 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 NOL4O94818 638 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 FGF19O95750 216 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 NDST1P52848 882 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 TAF12Q16514 161 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 IER5LQ5T953 404 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 PAQR9Q6ZVX9 377 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 ACOT1Q86TX2 421 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 MYRFLQ96LU7 910 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 ZNF518BQ9C0D4 1074 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 GPR88Q9GZN0 384 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 TRPV4Q9HBA0 871 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 METTL14Q9HCE5 456 aaKnown RBP16.85■□□□□ 0.29
CLN3-201ENST00000333496 ZFP14Q9HCL3 533 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 WNT16Q9UBV4 365 aa16.85■□□□□ 0.29
CLN3-201ENST00000333496 COL4A2P08572 1712 aa16.85■□□□□ 0.29
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms