RNA–Protein interactions for RNA: ENST00000328333.12

COL7A1-201, Transcript of collagen type VII alpha 1 chain, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene COL7A1, Length 9,276 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL7A1-201ENST00000328333 GLYCTKQ8IVS8 523 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ERVV-1B6SEH8 477 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 IL18RAPO95256 599 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 H2AFXP16104 143 aaPredicted RBP14.81□□□□□ -0.04
COL7A1-201ENST00000328333 DSTYKQ6XUX3 929 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MIEF2Q96C03 454 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 PKP3Q9Y446 797 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MROH7Q68CQ1 1323 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 LCA5LO95447 670 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 PGK2P07205 417 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 FASP25445 335 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 FMO5P49326 533 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ANKS1AQ92625 1134 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 SNX13Q9Y5W8 968 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 C15orf38-AP3S2A0A0A6YYH1 394 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MYL12AP19105 171 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ZNF211Q13398 564 aaPredicted RBP14.81□□□□□ -0.04
COL7A1-201ENST00000328333 TTLL9Q3SXZ7 439 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 LRRC24Q50LG9 513 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ARPINQ7Z6K5 226 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ATXN2LQ8WWM7 1075 aaKnown RBP14.81□□□□□ -0.04
COL7A1-201ENST00000328333 NMD3Q96D46 503 aaKnown RBP14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ZIM3Q96PE6 472 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 CATSPERBQ9H7T0 1116 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MFN2O95140 757 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 CRKP46108 304 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 HNMTP50135 292 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 C2CD6Q53TS8 623 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 EID3Q8N140 333 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ZBTB1Q9Y2K1 713 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 TRIM49BA6NDI0 452 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 MAPKAPK2P49137 400 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 CD274Q9NZQ7 290 aa14.81□□□□□ -0.04
COL7A1-201ENST00000328333 ZNF521Q96K83 1311 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 CCDC182A6NF36 153 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 SLC34A1Q06495 639 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 ARID3BQ8IVW6 561 aaPredicted RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 DENND6AQ8IWF6 608 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 BCORL1Q5H9F3 1711 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 RPS6P62753 249 aaKnown RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 SLC29A2Q14542 456 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 USP10Q14694 798 aaKnown RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 TMPRSS6Q8IU80 811 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 CD248Q9HCU0 757 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 CCDC88AQ3V6T2 1871 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 EIF4E1BA6NMX2 242 aaKnown RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 PPP2R1BP30154 601 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 LRRC74AQ0VAA2 488 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 EDC3Q96F86 508 aaKnown RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 C8orf37Q96NL8 207 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 PHTF1Q9UMS5 762 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 BBOX1O75936 387 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 BMP10O95393 424 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 RARGP13631 454 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 ZBTB33Q86T24 672 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 HDHD2Q9H0R4 259 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 DYRK4Q9NR20 520 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 MRPL39Q9NYK5 338 aaKnown RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 CES2O00748 559 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 SLC2A3P11169 496 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 NAA20P61599 178 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 MAD2L1Q13257 205 aaPredicted RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 FAM81AQ8TBF8 368 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 TRIM9Q9C026 710 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 CCDC59Q9P031 241 aaKnown RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 H3BNX3 289 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 MTERF2Q49AM1 385 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 CENPLQ8N0S6 344 aaPredicted RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 AADATQ8N5Z0 425 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 CAMKK2Q96RR4 588 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 SQORQ9Y6N5 450 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 GUCY1B2O75343 617 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 OTUD4Q01804 1114 aaKnown RBP14.8□□□□□ -0.04
COL7A1-201ENST00000328333 RASA2Q15283 850 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 SLC27A3Q5K4L6 730 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 STARD8Q92502 1023 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 FEM1BQ9UK73 627 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 PCDHB2Q9Y5E7 798 aa14.8□□□□□ -0.04
COL7A1-201ENST00000328333 RAD51CO43502 376 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 ANXA9O76027 345 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 TOB2Q14106 344 aaPredicted RBP14.79□□□□□ -0.04
COL7A1-201ENST00000328333 TFDP3Q5H9I0 405 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 TMEM63BQ5T3F8 832 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 C4orf33Q8N1A6 199 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 AMER2Q8N7J2 671 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 DCPSQ96C86 337 aaKnown RBP14.79□□□□□ -0.04
COL7A1-201ENST00000328333 ELMO2Q96JJ3 720 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 LXNQ9BS40 222 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 MYLK2Q9H1R3 596 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 CAMSAP3Q9P1Y5 1249 aaPredicted RBP14.79□□□□□ -0.04
COL7A1-201ENST00000328333 UTYO14607 1347 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 DENND3A2RUS2 1198 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 FAM220BPB1ANY3 271 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 PHGDHO43175 533 aaKnown RBP14.79□□□□□ -0.04
COL7A1-201ENST00000328333 RAP1GAPP47736 663 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 PSMC5P62195 406 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 CATSPER4Q7RTX7 472 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 ACAD9Q9H845 621 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 GLI2P10070 1586 aa14.79□□□□□ -0.04
COL7A1-201ENST00000328333 GSTA3Q16772 222 aa14.79□□□□□ -0.04
Retrieved 100 of 20,778 RNA–protein pairs in 134.5 ms