RNA–Protein interactions for RNA: ENST00000324288.12

CIITA-201, Transcript of class II major histocompatibility complex transactivator, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene CIITA, Length 11,952 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CIITA-201ENST00000324288 KBTBD2Q8IY47 623 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 PTPRHQ9HD43 1115 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 C3orf70A6NLC5 250 aaPredicted RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 ADSLP30566 484 aaPredicted RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 FXR1P51114 621 aaKnown RBP eCLIP8.21□□□□□ -1.1
CIITA-201ENST00000324288 NANOGNBQ7Z5D8 188 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 RBMX2Q9Y388 322 aaKnown RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 MYH7BA7E2Y1 1941 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 ASNSP08243 561 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 DDX39BQ13838 428 aaKnown RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 GIMAP8Q8ND71 665 aaPredicted RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 STKLD1Q8NE28 680 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 NSUN6Q8TEA1 469 aaKnown RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 ELP3Q9H9T3 547 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 CYP4F12Q9HCS2 524 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 MRPL42Q9Y6G3 142 aaKnown RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 HIST1H2AGP0C0S8 130 aaPredicted RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 HIST1H2ADP20671 130 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 AMHR2Q16671 573 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 SLC7A14Q8TBB6 771 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 ZSCAN18Q8TBC5 510 aaPredicted RBP8.21□□□□□ -1.1
CIITA-201ENST00000324288 HIST1H2AHQ96KK5 128 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 HIST1H2AJQ99878 128 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 TMEM79Q9BSE2 394 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 H2AFJQ9BTM1 129 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 PARVBQ9HBI1 364 aa8.21□□□□□ -1.1
CIITA-201ENST00000324288 ZNF197O14709 1029 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 AHCYL1O43865 530 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 KLHL41O60662 606 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 DDX5P17844 614 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 IL12RB1P42701 662 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 DHX34Q14147 1143 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 AASDHQ4L235 1098 aaPredicted RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 BNC2Q6ZN30 1099 aaPredicted RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 ZBTB49Q6ZSB9 765 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 LRRN4CLQ8ND94 238 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 KAT2BQ92831 832 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 LCMT1Q9UIC8 334 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 TNFRSF21O75509 655 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 BYSLQ13895 437 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 PROM2Q8N271 834 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 ENKURQ8TC29 256 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 PZPP20742 1482 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 WDR62O43379 1518 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 HMGCS2P54868 508 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 ITIH4Q14624 930 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 DUOXA2Q1HG44 320 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 PERM1Q5SV97 790 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 MTDHQ86UE4 582 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 L3MBTL3Q96JM7 780 aaPredicted RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 SNX9Q9Y5X1 595 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 LOC100506127A0A0U1RQW1 187 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 F8W810 466 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 CYP2E1P05181 493 aaPredicted RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 SNRPAP09012 282 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 RAD51Q06609 339 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 ORC1Q13415 861 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 MFSD14CQ5VZR4 134 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 THUMPD3Q9BV44 507 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 TMEM120AQ9BXJ8 343 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 DDX20Q9UHI6 824 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 ATP6V1HQ9UI12 483 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 KIF28PB7ZC32 967 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 RXRBP28702 533 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 KCNK10P57789 538 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 WDR72Q3MJ13 1102 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 RASGRP2Q7LDG7 609 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 RMI1Q9H9A7 625 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 SMG5Q9UPR3 1016 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 HNRNPRO43390 633 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 MT-CO1P00395 513 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 PRKCBP05771 671 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 PGK2P07205 417 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 LTKP29376 864 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 IL5RAQ01344 420 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 TP53BP2Q13625 1128 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 PTRHD1Q6GMV3 140 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 SMIM5Q71RC9 77 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 ASAP3Q8TDY4 903 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 KDM5DQ9BY66 1539 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 INTS13Q9NVM9 706 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 TADA2AO75478 443 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 LIFRP42702 1097 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 PLA2G4FQ68DD2 849 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 MCRS1Q96EZ8 462 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 SEMA6AQ9H2E6 1030 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 BTN3A3O00478 584 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 SGSM1Q2NKQ1 1148 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 AGKQ53H12 422 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 LRRC71Q8N4P6 559 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 EPB41L4AQ9HCS5 686 aaPredicted RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 BSDC1Q9NW68 430 aaPredicted RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 CDY2AQ9Y6F7 541 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 CDY1Q9Y6F8 540 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 ABCC2Q92887 1545 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 PTPN12Q05209 780 aaKnown RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 ZNF614Q8N883 585 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 RDM1Q8NG50 284 aa8.2□□□□□ -1.1
CIITA-201ENST00000324288 ZNF669Q96BR6 464 aaPredicted RBP8.2□□□□□ -1.1
CIITA-201ENST00000324288 ECSITQ9BQ95 431 aa8.2□□□□□ -1.1
Retrieved 100 of 20,778 RNA–protein pairs in 18.3 ms