RNA–Protein interactions for RNA: ENST00000316407.8

USF3-201, Transcript of upstream transcription factor family member 3, humanhuman

APPRIS P2 TSL 5 BASIC

Gene USF3, Length 13,708 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USF3-201ENST00000316407 SH2D3AQ9BRG2 576 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 LXNQ9BS40 222 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 ZNF222Q9UK12 451 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 MRC2Q9UBG0 1479 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 GPC3P51654 580 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 DDX39BQ13838 428 aaKnown RBP9.07□□□□□ -0.96
USF3-201ENST00000316407 DNAJC10Q8IXB1 793 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 OSBPL3Q9H4L5 887 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 CYP4F12Q9HCS2 524 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 CBX6O95503 412 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 CARTPTQ16568 116 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 C3orf20Q8ND61 904 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 CLASP1Q7Z460 1538 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 IFI30P13284 250 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 SULT1E1P49888 294 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 EPC2Q52LR7 807 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 NIM1KQ8IY84 436 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 SHCBP1Q8NEM2 672 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 FAM45AQ8TCE6 357 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 TRPC4APQ8TEL6 797 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 BCL2L14Q9BZR8 327 aa9.07□□□□□ -0.96
USF3-201ENST00000316407 SNRPAP09012 282 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 H2AFXP16104 143 aaPredicted RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 TGM2P21980 687 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 CHI3L1P36222 383 aaPredicted RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 ZNF235Q14590 738 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 RASSF6Q6ZTQ3 369 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ELOVL6Q9H5J4 265 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 JMJD4Q9H9V9 463 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MYH7BA7E2Y1 1941 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 WDR19Q8NEZ3 1342 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MAML3Q96JK9 1138 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PLEKHG4BQ96PX9 1271 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 EHD4Q9H223 541 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 HMG20AQ9NP66 347 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 SH3GLB2Q9NR46 395 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PRAMEF22A3QJZ6 481 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 FAM20BO75063 409 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MRPS22P82650 360 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 SYTL3Q4VX76 610 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 C11orf63Q6NUN7 778 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ADCK2Q7Z695 626 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 C10orf53Q8N6V4 93 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 APPL2Q8NEU8 664 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MROH7Q68CQ1 1323 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 INPP4BO15327 924 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PLOD3O60568 738 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 LSM3P62310 102 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 CCSAPQ6IQ19 270 aaPredicted RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 RIPOR1Q6ZS17 1223 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 RCOR2Q8IZ40 523 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 RBM46Q8TBY0 533 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 TRIM54Q9BYV2 358 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 TOR3AQ9H497 397 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 DKK3Q9UBP4 350 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PSIP1O75475 530 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 CYP2D6P10635 497 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MLNP12872 115 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MCAMP43121 646 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PTDSS1P48651 473 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 CYP4F2P78329 520 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 CYP4F3Q08477 520 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 KIAA0408Q6ZU52 694 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 HS6ST3Q8IZP7 471 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 STK32AQ8WU08 396 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 TMBIM4Q9HC24 238 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ATXN2Q99700 1313 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 UBXN8O00124 270 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MYCP01106 439 aaPredicted RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 RAD23AP54725 363 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MYBPC2Q14324 1141 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 SULT1C3Q6IMI6 304 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ATPAF2Q8N5M1 289 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 COPS4Q9BT78 406 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 C1orf50Q9BV19 199 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ISCUQ9H1K1 167 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PFASO15067 1338 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PZPP20742 1482 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 RALAP11233 206 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PTPN4P29074 926 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 DDR2Q16832 855 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PRUNE1Q86TP1 453 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MMADHCQ9H3L0 296 aaPredicted RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 SEC31BQ9NQW1 1179 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 CNTRLQ7Z7A1 2325 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 MAGP20916 626 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 GUCY1A2P33402 732 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 TPI1P60174 286 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 PID1Q7Z2X4 250 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 IPMKQ8NFU5 416 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 ZSCAN5CA6NGD5 496 aaPredicted RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 FCHO2Q0JRZ9 810 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 DGKDQ16760 1214 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 KHDRBS2Q5VWX1 349 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 PADI6Q6TGC4 694 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 UBE2OQ9C0C9 1292 aaKnown RBP9.06□□□□□ -0.96
USF3-201ENST00000316407 LRFN2Q9ULH4 789 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 OPLAHO14841 1288 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 FGFR2P21802 821 aa9.06□□□□□ -0.96
USF3-201ENST00000316407 SFSWAPQ12872 951 aaKnown RBP9.06□□□□□ -0.96
Retrieved 100 of 20,778 RNA–protein pairs in 26.5 ms