RNA–Protein interactions for RNA: ENST00000296043.6

SHROOM3-201, Transcript of shroom family member 3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene SHROOM3, Length 11,020 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHROOM3-201ENST00000296043 SWT1Q5T5J6 900 aaKnown RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 KIAA0408Q6ZU52 694 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 OR7A2PQ8NGA2 310 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 NACC1Q96RE7 527 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 KLHL1Q9NR64 748 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 TMCO1Q9UM00 188 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 SNX8Q9Y5X2 465 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 PLEKHA8P1O95397 391 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 TSNQ15631 228 aaKnown RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 FAM129BQ96TA1 746 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 FCHO1O14526 889 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 MYBL2P10244 700 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 SOAT1P35610 550 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 BORCS5Q969J3 196 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 PIGSQ96S52 555 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 CLRN2A0PK11 232 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 WDR93Q6P2C0 686 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 DMRTB1Q96MA1 342 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 PABPC3Q9H361 631 aaKnown RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 RAB6BQ9NRW1 208 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 DNAJC16Q9Y2G8 782 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 CYP2D7A0A087X1C5 515 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 VAV1P15498 845 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 ERCC2P18074 760 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 KCTD4Q8WVF5 259 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 OXNAD1Q96HP4 312 aaPredicted RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 FOXP2O15409 715 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 MAPKAPK2P49137 400 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 CLEC17AQ6ZS10 378 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 WDR48Q8TAF3 677 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 FBXO28Q9NVF7 368 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 MAGEA10P43363 369 aaPredicted RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 PPP3CCP48454 512 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 UBE2SQ16763 222 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 SYTL3Q4VX76 610 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 CUEDC1Q9NWM3 386 aaPredicted RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 NEDD4P46934 1319 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 NELFEP18615 380 aaKnown RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 DGKDQ16760 1214 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 RCOR2Q8IZ40 523 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 FAR1Q8WVX9 515 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 HPS3Q969F9 1004 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 AKAP5P24588 427 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 HK2P52789 917 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 RABL6Q3YEC7 729 aaPredicted RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 CCDC153Q494R4 210 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 FAM71DQ8N9W8 422 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 TDRD5Q8NAT2 981 aaKnown RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 TSPAN17Q96FV3 270 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 C14orf93Q9H972 538 aaKnown RBP12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 TRAPPC8Q9Y2L5 1435 aa12.19□□□□□ -0.46
SHROOM3-201ENST00000296043 EFCAB10A6NFE3 127 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 SLC16A2P36021 539 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 CAPZA2P47755 286 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 FAM102AQ5T9C2 384 aaPredicted RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 IQSEC1Q6DN90 963 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 OTOAQ7RTW8 1153 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 BHLHE22Q8NFJ8 381 aaPredicted RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 TMEM117Q9H0C3 514 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 CD274Q9NZQ7 290 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 DUSP12Q9UNI6 340 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 ATP8B3O60423 1300 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 MAGP20916 626 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 EIF2S3P41091 472 aaKnown RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 TUBA4AP68366 448 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 GALNT6Q8NCL4 622 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 ILKAPQ9H0C8 392 aaPredicted RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 ZNF846Q147U1 533 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 GNA15P30679 374 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 RHAGQ02094 409 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 TFDP1Q14186 410 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 C5orf22Q49AR2 442 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 SHC4Q6S5L8 630 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 CYP2R1Q6VVX0 501 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 RAD54LQ92698 747 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 PROX1Q92786 737 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 EPB41L1Q9H4G0 881 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 A0A1W2PQC6 194 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 MAGEA2P43356 314 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 ATG16L2Q8NAA4 619 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 RMDN1Q96DB5 314 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 NMRK1Q9NWW6 199 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 RABL2BQ9UNT1 228 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 PP2D1A8MPX8 630 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 NDUFB5O43674 189 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 DBTP11182 482 aaKnown RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 COPZ1P61923 177 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 SCFD2Q8WU76 684 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 DNAAF2Q9NVR5 837 aaKnown RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 LEMD3Q9Y2U8 911 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 FAM160B1Q5W0V3 765 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 TYW3Q6IPR3 259 aaKnown RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 MTHFD1LQ6UB35 978 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 DPP10Q8N608 796 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 L1RE1Q9UN81 338 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 PLOD3O60568 738 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 GSTM1P09488 218 aa12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 ATN1P54259 1190 aaPredicted RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 C1orf131Q8NDD1 294 aaKnown RBP12.18□□□□□ -0.46
SHROOM3-201ENST00000296043 NAT14Q8WUY8 206 aa12.18□□□□□ -0.46
Retrieved 100 of 20,778 RNA–protein pairs in 25.3 ms