RNA–Protein interactions for RNA: ENST00000249440.4

HOXD3-201, Transcript of homeobox D3, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HOXD3, Length 2,303 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HOXD3-201ENST00000249440 RIOX2Q8IUF8 465 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 THNSL1Q8IYQ7 743 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 ACTL9Q8TC94 416 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 ARHGEF3Q9NR81 526 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 FETUBQ9UGM5 382 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 PNMA3Q9UL41 463 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 PHTF1Q9UMS5 762 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 SSC5DA1L4H1 1573 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 WDR90Q96KV7 1748 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 SOWAHBA6NEL2 793 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 B4GALT4O60513 344 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 CST8O60676 142 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 CA4P22748 312 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 CTCFP49711 727 aaPredicted RBP17.25■□□□□ 0.35
HOXD3-201ENST00000249440 GEMIN4P57678 1058 aaKnown RBP17.25■□□□□ 0.35
HOXD3-201ENST00000249440 DNAJC3Q13217 504 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 PDK4Q16654 411 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 SMTNL2Q2TAL5 461 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 DENND1BQ6P3S1 775 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 TSHZ1Q6ZSZ6 1077 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 ECHDC2Q86YB7 292 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 FBF1Q8TES7 1133 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 PYROXD1Q8WU10 500 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 KIF9Q9HAQ2 790 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 WDR35Q9P2L0 1181 aa17.25■□□□□ 0.35
HOXD3-201ENST00000249440 NXF1Q9UBU9 619 aaKnown RBP17.25■□□□□ 0.35
HOXD3-201ENST00000249440 EPB41L3Q9Y2J2 1087 aaPredicted RBP17.25■□□□□ 0.35
HOXD3-201ENST00000249440 PCNTO95613 3336 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 GOLGA8MH3BSY2 632 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 CCNB1P14635 433 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 PROZP22891 400 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 KDELR1P24390 212 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 MARK3P27448 753 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 RPA3P35244 121 aaPredicted RBP17.24■□□□□ 0.35
HOXD3-201ENST00000249440 ARL4CP56559 192 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 PSMC1P62191 440 aaKnown RBP17.24■□□□□ 0.35
HOXD3-201ENST00000249440 LY6KQ17RY6 165 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 KCNT1Q5JUK3 1230 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 BBS12Q6ZW61 710 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 ASRGL1Q7L266 308 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 C4orf33Q8N1A6 199 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 LRRC71Q8N4P6 559 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 RSAD2Q8WXG1 361 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 TBC1D31Q96DN5 1066 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 SAE1Q9UBE0 346 aaPredicted RBP17.24■□□□□ 0.35
HOXD3-201ENST00000249440 PPP2R3BQ9Y5P8 575 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 SNCAIPQ9Y6H5 919 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 ANK1P16157 1881 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 IGKV6-21A0A0C4DH24 114 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 ACKR2O00590 384 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 SETDB1Q15047 1291 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 EFHC2Q5JST6 749 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 ATF7IP2Q5U623 682 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 EEPD1Q7L9B9 569 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 NCAPG2Q86XI2 1143 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 RHPN2Q8IUC4 686 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 ANKMY2Q8IV38 441 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 ATP11CQ8NB49 1132 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 JOSD2Q8TAC2 188 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 LRRC8CQ8TDW0 803 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 SYNCQ9H7C4 482 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 PTPRHQ9HD43 1115 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 SSU72Q9NP77 194 aaKnown RBP17.24■□□□□ 0.35
HOXD3-201ENST00000249440 BTBD7Q9P203 1132 aa17.24■□□□□ 0.35
HOXD3-201ENST00000249440 MGAMO43451 1857 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 PEX10O60683 326 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 UNC5CO95185 931 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 KRT19P08727 400 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 IL1R2P27930 398 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 GDF10P55107 478 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 GPX6P59796 221 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 OSTNP61366 133 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 MYO1EQ12965 1108 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 TMEM132AQ24JP5 1023 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 TREML2Q5T2D2 321 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 ARFGAP1Q8N6T3 406 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 DDX55Q8NHQ9 600 aaKnown RBP eCLIP17.23■□□□□ 0.35
HOXD3-201ENST00000249440 GIMAP7Q8NHV1 300 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 CPT1BQ92523 772 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 MRRFQ96E11 262 aaKnown RBP17.23■□□□□ 0.35
HOXD3-201ENST00000249440 RABGEF1Q9UJ41 708 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 USH1CQ9Y6N9 552 aa17.23■□□□□ 0.35
HOXD3-201ENST00000249440 SMAPO00193 183 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 NOP56O00567 594 aaKnown RBP17.22■□□□□ 0.35
HOXD3-201ENST00000249440 TYROBPO43914 113 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 ALADP13716 330 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 GBP2P32456 591 aaPredicted RBP17.22■□□□□ 0.35
HOXD3-201ENST00000249440 YARSP54577 528 aaKnown RBP17.22■□□□□ 0.35
HOXD3-201ENST00000249440 PRKG1Q13976 671 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 TFDP1Q14186 410 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 TAZQ16635 292 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 ZC3H12AQ5D1E8 599 aaKnown RBP17.22■□□□□ 0.35
HOXD3-201ENST00000249440 ZNF667Q5HYK9 610 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 HHATQ5VTY9 493 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 NAT8LQ8N9F0 302 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 MYCBPQ99417 103 aaPredicted RBP17.22■□□□□ 0.35
HOXD3-201ENST00000249440 GGA3Q9NZ52 723 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 CYTH4Q9UIA0 394 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 MCM8Q9UJA3 840 aa17.22■□□□□ 0.35
HOXD3-201ENST00000249440 POLIQ9UNA4 740 aa17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 23.1 ms