RNA–Protein interactions for RNA: ENST00000236192.11

VAMP4-201, Transcript of vesicle associated membrane protein 4, humanhuman

APPRIS P3 TSL 1 (best) BASIC

Gene VAMP4, Length 5,159 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VAMP4-201ENST00000236192 SPATA20Q8TB22 786 aa13.4□□□□□ -0.27
VAMP4-201ENST00000236192 RIN3Q8TB24 985 aa13.4□□□□□ -0.27
VAMP4-201ENST00000236192 PUS3Q9BZE2 481 aaKnown RBP13.4□□□□□ -0.27
VAMP4-201ENST00000236192 GRID1Q9ULK0 1009 aa13.4□□□□□ -0.27
VAMP4-201ENST00000236192 MROH5Q6ZUA9 1318 aa13.4□□□□□ -0.27
VAMP4-201ENST00000236192 K7ENM7 598 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 CASP2P42575 452 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 SLC25A3Q00325 362 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 ZNF829Q3KNS6 432 aaPredicted RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 TPTE2Q6XPS3 522 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 CENPSQ8N2Z9 138 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 GSTCDQ8NEC7 633 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 KANSL2Q9H9L4 492 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 KLHL20Q9Y2M5 609 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 CROCC2H7BZ55 1655 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 IQGAP1P46940 1657 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 SPDYE16A6NNV3 312 aaPredicted RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 PIK3R2O00459 728 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 MTSS1O43312 755 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 PARNO95453 639 aaKnown RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 POLR2BP30876 1174 aaKnown RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 ARHGEF19Q8IW93 802 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 PQLC1Q8N2U9 271 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 BEST2Q8NFU1 509 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 REXO4Q9GZR2 422 aaKnown RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 THAP2Q9H0W7 228 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 TRPV5Q9NQA5 729 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 A0A1B0GW55 424 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 TMEM114B3SHH9 223 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 RHOBTB1O94844 696 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 DUX4L2P0CJ85 424 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 DUX4L3P0CJ86 424 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 DUX4L4P0CJ87 422 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 DUX4L5P0CJ88 424 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 DUX4L6P0CJ89 424 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 DUX4L7P0CJ90 424 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 BFSP2Q13515 415 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 FAM172AQ8WUF8 416 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 OSCP1Q8WVF1 389 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 EFHD2Q96C19 240 aaPredicted RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 OXCT2Q9BYC2 517 aaPredicted RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 DUX4Q9UBX2 424 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 PSMD13Q9UNM6 376 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 ARHGDIAP52565 204 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 MAPK10P53779 464 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 HIRAP54198 1017 aaPredicted RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 MRPS22P82650 360 aaKnown RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 NRF1Q16656 503 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 SMU1Q2TAY7 513 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 TPH2Q8IWU9 490 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 ZSCAN29Q8IWY8 852 aaPredicted RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 HNRNPABQ99729 332 aaKnown RBP13.39□□□□□ -0.27
VAMP4-201ENST00000236192 FBXO28Q9NVF7 368 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 ATPIF1Q9UII2 106 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 SIK3Q9Y2K2 1263 aa13.39□□□□□ -0.27
VAMP4-201ENST00000236192 M0QX08 132 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 CCNKO75909 580 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 AMPD1P23109 780 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 PSMA4P25789 261 aaKnown RBP13.38□□□□□ -0.27
VAMP4-201ENST00000236192 ARMCX4Q5H9R4 360 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 FBXW8Q8N3Y1 598 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 KCTD6Q8NC69 237 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 DCLK3Q9C098 648 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 NCKAP5LQ9HCH0 1330 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 ESYT2A0FGR8 921 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 CLOCKO15516 846 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 GH1P01241 217 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 VDRP11473 427 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 DDX5P17844 614 aaKnown RBP13.38□□□□□ -0.27
VAMP4-201ENST00000236192 GALNT18Q6P9A2 607 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 SNX27Q96L92 541 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 SEMA6BQ9H3T3 888 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 POLR1BQ9H9Y6 1135 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 OSGEPQ9NPF4 335 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 GIT1Q9Y2X7 761 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 ZHX2Q9Y6X8 837 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 CRB1P82279 1406 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 A0A0G2JLW4 131 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 NEMP1O14524 444 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 MAGEB3O15480 346 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 ECE2O60344 883 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 TSC22D2O75157 780 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 RELAQ04206 551 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 C11orf63Q6NUN7 778 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 DNAJC24Q6P3W2 148 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 DPH6Q7L8W6 267 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 POC5Q8NA72 575 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 IRGQQ8WZA9 623 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 DUSP9Q99956 384 aaKnown RBP13.38□□□□□ -0.27
VAMP4-201ENST00000236192 CCSER2Q9H7U1 834 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 JMJD4Q9H9V9 463 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 SCN3BQ9NY72 215 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 CDYLQ9Y232 598 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 DNAJC16Q9Y2G8 782 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 ZC3H4Q9UPT8 1303 aaKnown RBP13.38□□□□□ -0.27
VAMP4-201ENST00000236192 H0YGN5 161 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 ATF4P18848 351 aaPredicted RBP13.38□□□□□ -0.27
VAMP4-201ENST00000236192 CRABP2P29373 138 aa13.38□□□□□ -0.27
VAMP4-201ENST00000236192 CDK9P50750 372 aaKnown RBP13.38□□□□□ -0.27
VAMP4-201ENST00000236192 ATAD3BQ5T9A4 648 aa13.38□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 27.5 ms