RNA–Protein interactions for RNA: ENST00000637988.1

SCN1A-217, Transcript of sodium voltage-gated channel alpha subunit 1, humanhuman

APPRIS P3 TSL 5 BASIC

Gene SCN1A, Length 8,562 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN1A-217ENST00000637988 CGRRF1Q99675 332 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 EPB41L5Q9HCM4 733 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 PPP2R2CQ9Y2T4 447 aa6.39□□□□□ -1.39
SCN1A-217ENST00000637988 NUMA1Q14980 2115 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 TRPM1Q7Z4N2 1603 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PDHXO00330 501 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 STRNO43815 780 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PEX1O43933 1283 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 TRIM16O95361 564 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ACSL3O95573 720 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 FGFR1P11362 822 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 GRK4P32298 578 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 EIF3EP60228 445 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 BNC1Q01954 994 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 AASDHQ4L235 1098 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 C4orf22Q6V702 233 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 BARGINQ6ZT62 677 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 DPP3Q9NY33 737 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 UBQLN1Q9UMX0 589 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PCDHA7Q9UN72 937 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RFX7Q2KHR2 1363 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RNF103-CHMP3A0A140T963 221 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 A0A1W2PQ27 194 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 A0A1W2PQ64 194 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 A0A1W2PQD8 194 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 POTEFA5A3E0 1075 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 TRIM66O15016 1216 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 AP1G2O75843 785 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PPP2R1BP30154 601 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CDC27P30260 824 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SLC26A2P50443 739 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PRKCEQ02156 737 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SP3Q02447 781 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 LLGL2Q6P1M3 1020 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 COLGALT2Q8IYK4 626 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 FIBCD1Q8N539 461 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RDM1Q8NG50 284 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 FAM162AQ96A26 154 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 C11orf70Q9BRQ4 267 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PRKD2Q9BZL6 878 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 VPS33BQ9H267 617 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 COQ6Q9Y2Z9 468 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 MAGEC1O60732 1142 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 VPS4BO75351 444 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SPAG7O75391 227 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SOAT2O75908 522 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 GNGT1P63211 74 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 MMRN1Q13201 1228 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 GOLGA7BQ2TAP0 167 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 LRRC8EQ6NSJ5 796 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PACS1Q6VY07 963 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CATSPER3Q86XQ3 398 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CDK20Q8IZL9 346 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SUN3Q8TAQ9 357 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 UBE2Q2Q8WVN8 375 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 H3BUI4 141 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RGL2O15211 777 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 AVILO75366 819 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CRTAMO95727 393 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 POTEIP0CG38 1075 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 GNSP15586 552 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PRDX5P30044 214 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RCAN1P53805 252 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 AAK1Q2M2I8 961 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SETMARQ53H47 684 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CACHD1Q5VU97 1274 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 POTEGQ6S5H5 508 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 POTEEQ6S8J3 1075 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 DENND6AQ8IWF6 608 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CLPBQ9H078 707 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PUS7LQ9H0K6 701 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 TMEM60Q9H2L4 133 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ELOVL2Q9NXB9 296 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CTIFO43310 598 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 VPS26AO75436 327 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 FKBP9O95302 570 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ANXA5P08758 320 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 KITP10721 976 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RRM2P31350 389 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 TCF7P36402 384 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 COASYQ13057 564 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 LLGL1Q15334 1064 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ATAD3BQ5T9A4 648 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 FKBP9P1Q75LS8 142 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SAMD7Q7Z3H4 446 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 RCOR2Q8IZ40 523 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 SENP7Q9BQF6 1050 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 FTHL17Q9BXU8 183 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 PADI4Q9UM07 663 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ZBTB12Q9Y330 459 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 POLRMTO00411 1230 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CASP14P31944 242 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 CSTF3Q12996 717 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 ZKSCAN8Q15776 578 aaPredicted RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 KIAA1324Q6UXG2 1013 aaKnown RBP6.38□□□□□ -1.39
SCN1A-217ENST00000637988 DPP10Q8N608 796 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 TRIML2Q8N7C3 387 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 FBXO22Q8NEZ5 403 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 DCLK3Q9C098 648 aa6.38□□□□□ -1.39
SCN1A-217ENST00000637988 DNAJC5Q9H3Z4 198 aa6.38□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 30.1 ms