RNA–Protein interactions for RNA: ENST00000637578.1

CLN3-260, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 1,577 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-260ENST00000637578 NHLH1Q02575 133 aa20.62■□□□□ 0.89
CLN3-260ENST00000637578 GPT2Q8TD30 523 aa20.62■□□□□ 0.89
CLN3-260ENST00000637578 ERCC4Q92889 916 aaPredicted RBP20.62■□□□□ 0.89
CLN3-260ENST00000637578 IL21Q9HBE4 155 aa20.62■□□□□ 0.89
CLN3-260ENST00000637578 GTF3C4Q9UKN8 822 aa20.62■□□□□ 0.89
CLN3-260ENST00000637578 LRRIQ3A6PVS8 624 aaPredicted RBP20.61■□□□□ 0.89
CLN3-260ENST00000637578 MAPK13O15264 365 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 GALR2O43603 387 aaPredicted RBP20.61■□□□□ 0.89
CLN3-260ENST00000637578 HCRTO43612 131 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 TACC1O75410 805 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 LMO2P25791 158 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 ATICP31939 592 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 PFKPQ01813 784 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 VEPH1Q14D04 833 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 CFAP221Q4G0U5 840 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 ELOA2Q8IYF1 753 aaPredicted RBP20.61■□□□□ 0.89
CLN3-260ENST00000637578 MKNK1Q9BUB5 465 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 VRTNQ9H8Y1 702 aa20.61■□□□□ 0.89
CLN3-260ENST00000637578 MYBPHLA2RUH7 354 aa20.6■□□□□ 0.89
CLN3-260ENST00000637578 CALUO43852 315 aaPredicted RBP20.6■□□□□ 0.89
CLN3-260ENST00000637578 C4BPAP04003 597 aaKnown RBP20.6■□□□□ 0.89
CLN3-260ENST00000637578 HMGA1P17096 107 aaKnown RBP20.6■□□□□ 0.89
CLN3-260ENST00000637578 PTPN5P54829 565 aa20.6■□□□□ 0.89
CLN3-260ENST00000637578 MCCD1P59942 119 aaPredicted RBP20.6■□□□□ 0.89
CLN3-260ENST00000637578 MYL6P60660 151 aa20.6■□□□□ 0.89
CLN3-260ENST00000637578 TDRD10Q5VZ19 366 aaKnown RBP20.6■□□□□ 0.89
CLN3-260ENST00000637578 ZSCAN18Q8TBC5 510 aaPredicted RBP20.6■□□□□ 0.89
CLN3-260ENST00000637578 TMC2Q8TDI7 906 aa20.6■□□□□ 0.89
CLN3-260ENST00000637578 FUBP3Q96I24 572 aaKnown RBP eCLIP20.6■□□□□ 0.89
CLN3-260ENST00000637578 PI4K2AQ9BTU6 479 aa20.6■□□□□ 0.89
CLN3-260ENST00000637578 DDX23Q9BUQ8 820 aaKnown RBP20.6■□□□□ 0.89
CLN3-260ENST00000637578 TBC1D17Q9HA65 648 aa20.6■□□□□ 0.89
CLN3-260ENST00000637578 HOOK1Q9UJC3 728 aaKnown RBP20.6■□□□□ 0.89
CLN3-260ENST00000637578 CDH9Q9ULB4 789 aa20.6■□□□□ 0.89
CLN3-260ENST00000637578 CYP2F1P24903 491 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 GABRR2P28476 465 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 WEE1P30291 646 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 CCDC142Q17RM4 750 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 WDR72Q3MJ13 1102 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 SLC44A4Q53GD3 710 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 SPATA20Q8TB22 786 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 FAM200AQ8TCP9 573 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 MMS19Q96T76 1030 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 IKBKBO14920 756 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 ATP2C2O75185 946 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 VIPR2P41587 438 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 DLG4P78352 724 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 PRKCQQ04759 706 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 TRPC3Q13507 836 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 CAMK4Q16566 473 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 ZCWPW2Q504Y3 356 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 C1orf220Q5T0J3 134 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 STXBP5Q5T5C0 1151 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 VITQ6UXI7 678 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 GIPC2Q8TF65 315 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 SYAP1Q96A49 352 aaPredicted RBP20.59■□□□□ 0.89
CLN3-260ENST00000637578 E2F7Q96AV8 911 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 SHDQ96IW2 340 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 SYT15Q9BQS2 421 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 MRPL45Q9BRJ2 306 aaKnown RBP20.59■□□□□ 0.89
CLN3-260ENST00000637578 ATXN3LQ9H3M9 355 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 CRTAC1Q9NQ79 661 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 MAPK8IP1Q9UQF2 711 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 FRMD4BQ9Y2L6 1034 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 NME7Q9Y5B8 376 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 PCDHA5Q9Y5H7 936 aa20.59■□□□□ 0.89
CLN3-260ENST00000637578 VNN1O95497 513 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 PSMC3P17980 439 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 CDC25CP30307 473 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 GNL1P36915 607 aaPredicted RBP20.58■□□□□ 0.88
CLN3-260ENST00000637578 MAGEA11P43364 429 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 GPR15P49685 360 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 RPL10AP62906 217 aaKnown RBP20.58■□□□□ 0.88
CLN3-260ENST00000637578 ENPEPQ07075 957 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 MLF2Q15773 248 aaPredicted RBP20.58■□□□□ 0.88
CLN3-260ENST00000637578 ZACNQ401N2 412 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 TMEM150AQ86TG1 271 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 MFSD6LQ8IWD5 586 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 DEPDC1BQ8WUY9 529 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 GSDMAQ96QA5 445 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 TRMT61BQ9BVS5 477 aaKnown RBP20.58■□□□□ 0.88
CLN3-260ENST00000637578 CLSTN2Q9H4D0 955 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 TRPV5Q9NQA5 729 aa20.58■□□□□ 0.88
CLN3-260ENST00000637578 CACNA1HO95180 2353 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 NCANO14594 1321 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 AKAP3O75969 853 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 SMC2O95347 1197 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 NR2F2P24468 414 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 MAPRE1Q15691 268 aaKnown RBP20.57■□□□□ 0.88
CLN3-260ENST00000637578 COBLL1Q53SF7 1204 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 CEP135Q66GS9 1140 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 SPATA2LQ8IUW3 424 aaPredicted RBP20.57■□□□□ 0.88
CLN3-260ENST00000637578 CCDC105Q8IYK2 499 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 DNASE1L2Q92874 299 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 SMARCE1Q969G3 411 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 RSPRY1Q96DX4 576 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 SLITRK6Q9H5Y7 841 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 TASP1Q9H6P5 420 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 DLGAP2Q9P1A6 1054 aa20.57■□□□□ 0.88
CLN3-260ENST00000637578 PHACTR2O75167 634 aa20.56■□□□□ 0.88
Retrieved 100 of 20,778 RNA–protein pairs in 61.4 ms