RNA–Protein interactions for RNA: ENST00000637050.1

CLN3-254, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,684 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-254ENST00000637050 CYP11A1P05108 521 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 ITGB1P05556 798 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 ODC1P11926 461 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 RRM1P23921 792 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 GPD2P43304 727 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 BRCC3P46736 316 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 PAN2Q504Q3 1202 aaKnown RBP19.53■□□□□ 0.72
CLN3-254ENST00000637050 LIN9Q5TKA1 542 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 PAPD7Q5XG87 772 aaKnown RBP19.53■□□□□ 0.72
CLN3-254ENST00000637050 SLFN11Q7Z7L1 901 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 SUSD3Q96L08 255 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 DNAJB4Q9UDY4 337 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 CYTH4Q9UIA0 394 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 LTBP2Q14767 1821 aa19.53■□□□□ 0.72
CLN3-254ENST00000637050 ABHD14A-ACY1A0A1B0GW23 586 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 CALB1P05937 261 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 CSF2RAP15509 400 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 AMPD2Q01433 879 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 PKDCCQ504Y2 493 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 C2CD6Q53TS8 623 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 ERICH1Q86X53 443 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 LPIN3Q9BQK8 851 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 NUP85Q9BW27 656 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 MRPL9Q9BYD2 267 aaKnown RBP19.52■□□□□ 0.72
CLN3-254ENST00000637050 NRDE2Q9H7Z3 1164 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 FAM49BQ9NUQ9 324 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 DDX43Q9NXZ2 648 aaKnown RBP19.52■□□□□ 0.72
CLN3-254ENST00000637050 CHORDC1Q9UHD1 332 aaPredicted RBP19.52■□□□□ 0.72
CLN3-254ENST00000637050 MYH10P35580 1976 aa19.52■□□□□ 0.72
CLN3-254ENST00000637050 F8W810 466 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 I3L4J1 428 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 BUB1BO60566 1050 aaPredicted RBP19.52■□□□□ 0.71
CLN3-254ENST00000637050 PFKMP08237 780 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 GOLGA7BQ2TAP0 167 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 PLEKHA7Q6IQ23 1121 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 SYCE1Q8N0S2 351 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 TMEM199Q8N511 208 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 B3GALNT2Q8NCR0 500 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 ZNF564Q8TBZ8 553 aaPredicted RBP19.52■□□□□ 0.71
CLN3-254ENST00000637050 HASPINQ8TF76 798 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 DSEQ9UL01 958 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 TIMM13Q9Y5L4 95 aaPredicted RBP19.52■□□□□ 0.71
CLN3-254ENST00000637050 TSC2P49815 1807 aa19.52■□□□□ 0.71
CLN3-254ENST00000637050 ARHGEF37A1IGU5 675 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 FTCDO95954 541 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 OR1G1P47890 313 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 TUBB2AQ13885 445 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 PTPN20Q4JDL3 420 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 MEI1Q5TIA1 1274 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 KIAA0319Q5VV43 1072 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 TTC30AQ86WT1 665 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 UBA3Q8TBC4 463 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 TUBB2BQ9BVA1 445 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 TLR10Q9BXR5 811 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 ABCB6Q9NP58 842 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 MRFAP1Q9Y605 127 aa19.51■□□□□ 0.71
CLN3-254ENST00000637050 TBKBP1A7MCY6 615 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 ATP2C2O75185 946 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 PTPN1P18031 435 aaKnown RBP19.5■□□□□ 0.71
CLN3-254ENST00000637050 TYMPP19971 482 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 C11orf63Q6NUN7 778 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 LLGL2Q6P1M3 1020 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 DAAM2Q86T65 1068 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 METTL23Q86XA0 190 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 HESX1Q9UBX0 185 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 PCDHB8Q9UN66 801 aa19.5■□□□□ 0.71
CLN3-254ENST00000637050 FNDC1Q4ZHG4 1894 aaPredicted RBP19.5■□□□□ 0.71
CLN3-254ENST00000637050 TCRBV5S1A1TA0A578 114 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 RIOK3O14730 519 aaKnown RBP19.49■□□□□ 0.71
CLN3-254ENST00000637050 DGKIO75912 1065 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 SETSIPP0DME0 302 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 CCDC130P13994 396 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 PRLRP16471 622 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 ACAT1P24752 427 aaKnown RBP19.49■□□□□ 0.71
CLN3-254ENST00000637050 GABRB2P47870 512 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 GSCP56915 257 aaPredicted RBP19.49■□□□□ 0.71
CLN3-254ENST00000637050 PSMC1P62191 440 aaKnown RBP19.49■□□□□ 0.71
CLN3-254ENST00000637050 PDCLQ13371 301 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 MAMLD1Q13495 774 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 ANKRD52Q8NB46 1076 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 MSANTD4Q8NCY6 345 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 CPXM1Q96SM3 734 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 HNRNPABQ99729 332 aaKnown RBP19.49■□□□□ 0.71
CLN3-254ENST00000637050 RTP3Q9BQQ7 232 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 TMEM175Q9BSA9 504 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 GOLPH3Q9H4A6 298 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 MRPL47Q9HD33 250 aaKnown RBP19.49■□□□□ 0.71
CLN3-254ENST00000637050 PARVAQ9NVD7 372 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 CDC23Q9UJX2 597 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 CDH9Q9ULB4 789 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 STRIP2Q9ULQ0 834 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 SAR1BQ9Y6B6 198 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 SCINQ9Y6U3 715 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 NRP1O14786 923 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 EFCAB14O75071 495 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 PCSK1P29120 753 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 PHLDB2Q86SQ0 1253 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 NT5DC3Q86UY8 548 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 LRRC43Q8N309 656 aa19.49■□□□□ 0.71
CLN3-254ENST00000637050 SLC35F5Q8WV83 523 aa19.49■□□□□ 0.71
Retrieved 100 of 20,778 RNA–protein pairs in 44 ms