RNA–Protein interactions for RNA: ENST00000619079.1

UPF3A-212, Transcript of UPF3A, regulator of nonsense mediated mRNA decay, humanhuman

TSL 2

Gene UPF3A, Length 2,423 nt, Biotype retained intron.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3A-212ENST00000619079 KCNA1Q09470 495 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 OVGP1Q12889 678 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 C1orf146Q5VVC0 180 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 FKBP1CQ5VVH2 108 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 KYAT3Q6YP21 454 aaKnown RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 CENPUQ71F23 418 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 FAM83AQ86UY5 434 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 CHSY1Q86X52 802 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 LMO3Q8TAP4 145 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 FAM151AQ8WW52 585 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 NOCTQ9UK39 431 aaKnown RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 FRMPD2Q68DX3 1309 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 RSPH10B2B2RC85 870 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 F5H6K3 240 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 ENTPD3O75355 529 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 DLDP09622 509 aaKnown RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 RSPH10BP0C881 870 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 SPATA31C1P0DKV0 1188 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 HARSP12081 509 aaKnown RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 KLRC2P26717 231 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 PHBP35232 272 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 PSMC6P62333 389 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 SPIRE1Q08AE8 756 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 P3H1Q32P28 736 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 GSTA5Q7RTV2 222 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 DHDDSQ86SQ9 333 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 SLC9A9Q8IVB4 645 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 ZFPM1Q8IX07 1006 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 ULK2Q8IYT8 1036 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 MTBPQ96DY7 904 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 BTBD6Q96KE9 485 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 CSRNP1Q96S65 589 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 PCDHB18PQ96TA0 734 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 TTC1Q99614 292 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 LBHD1Q9BQE6 289 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 MAK16Q9BXY0 300 aaKnown RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 EBF3Q9H4W6 596 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 C17orf75Q9HAS0 396 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 FBXO6Q9NRD1 293 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 AGPAT3Q9NRZ7 376 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 CHMP2BQ9UQN3 213 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 RABGAP1Q9Y3P9 1069 aa11.36□□□□□ -0.59
UPF3A-212ENST00000619079 GTF3C5Q9Y5Q8 519 aaPredicted RBP11.36□□□□□ -0.59
UPF3A-212ENST00000619079 ATRNL1Q5VV63 1379 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 NFASCO94856 1347 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 FAM170AA1A519 330 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 H3BRJ5 948 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 MEIS1O00470 390 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 BUD23O43709 281 aaKnown RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 HLA-DOAP06340 250 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 SPATA31D3P0C874 917 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 SNHG28P0DPA3 235 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 MAPK4P31152 587 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 CHN2P52757 468 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 PRKG1Q13976 671 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 TTLL12Q14166 644 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 EFHC2Q5JST6 749 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 SPATA31D4Q6ZUB0 917 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 ZNF554Q86TJ5 538 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 ZNF276Q8N554 614 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 FAM172AQ8WUF8 416 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 SLC5A5Q92911 643 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 CLMNQ96JQ2 1002 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 PANX3Q96QZ0 392 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 BHMT2Q9H2M3 363 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 HSFX1Q9UBD0 423 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 CHORDC1Q9UHD1 332 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 PPP2R3BQ9Y5P8 575 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 A0A1W2PPM1 405 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 SPECC1L-ADORA2AF8WAN1 911 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 DNALI1O14645 258 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 ALOX15BO15296 676 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 CSDE1O75534 798 aaKnown RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 RPL5P46777 297 aaKnown RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 CYP2J2P51589 502 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 KLF1Q13351 362 aaPredicted RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 MORF4L2Q15014 288 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 SUPT20HL1Q3ZLR7 823 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 FAM71AQ8IYT1 594 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 MYCT1Q8N699 235 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 NMD3Q96D46 503 aaKnown RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 CDCA5Q96FF9 252 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 FAM20AQ96MK3 541 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 BTBD9Q96Q07 612 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 KLHL4Q9C0H6 718 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 C1orf21Q9H246 121 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 JMJD4Q9H9V9 463 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 KCNK13Q9HB14 408 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 PARVGQ9HBI0 331 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 KCNK4Q9NYG8 393 aa11.35□□□□□ -0.59
UPF3A-212ENST00000619079 PAIP2BQ9ULR5 123 aaKnown RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 SEC23IPQ9Y6Y8 1000 aaKnown RBP11.35□□□□□ -0.59
UPF3A-212ENST00000619079 CNTNAP1P78357 1384 aa11.34□□□□□ -0.59
UPF3A-212ENST00000619079 A0A0J9YVX5 310 aa11.34□□□□□ -0.59
UPF3A-212ENST00000619079 DDTLA6NHG4 134 aaPredicted RBP11.34□□□□□ -0.59
UPF3A-212ENST00000619079 HNRNPCP07910 306 aaKnown RBP eCLIP11.34□□□□□ -0.59
UPF3A-212ENST00000619079 CPA3P15088 417 aa11.34□□□□□ -0.59
UPF3A-212ENST00000619079 DCTN2Q13561 401 aaKnown RBP11.34□□□□□ -0.59
UPF3A-212ENST00000619079 KLHL38Q2WGJ6 581 aa11.34□□□□□ -0.59
UPF3A-212ENST00000619079 NBPF12Q5TAG4 269 aaPredicted RBP11.34□□□□□ -0.59
Retrieved 100 of 20,778 RNA–protein pairs in 55 ms