RNA–Protein interactions for RNA: ENST00000599342.5

VRK3-216, Transcript of vaccinia related kinase 3, humanhuman

TSL 3

Gene VRK3, Length 795 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VRK3-216ENST00000599342 PRAMEF12O95522 483 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 ACAT1P24752 427 aaKnown RBP10.52□□□□□ -0.73
VRK3-216ENST00000599342 DDX6P26196 483 aaKnown RBP eCLIP10.52□□□□□ -0.73
VRK3-216ENST00000599342 WEE1P30291 646 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 CTHP32929 405 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 SOX9P48436 509 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 GPR15P49685 360 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 NLRP12P59046 1061 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 RPL10AP62906 217 aaKnown RBP10.52□□□□□ -0.73
VRK3-216ENST00000599342 E2F4Q16254 413 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 DUOXA2Q1HG44 320 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 FOXD4L6Q3SYB3 417 aaPredicted RBP10.52□□□□□ -0.73
VRK3-216ENST00000599342 FAM26FQ5R3K3 315 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 FOXD4L3Q6VB84 417 aaPredicted RBP10.52□□□□□ -0.73
VRK3-216ENST00000599342 RALGPS2Q86X27 583 aaPredicted RBP10.52□□□□□ -0.73
VRK3-216ENST00000599342 CBWD2Q8IUF1 395 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 SPATA2LQ8IUW3 424 aaPredicted RBP10.52□□□□□ -0.73
VRK3-216ENST00000599342 WDR49Q8IV35 697 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 CMTM8Q8IZV2 173 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 ZNF687Q8N1G0 1237 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 CELF5Q8N6W0 485 aaKnown RBP10.52□□□□□ -0.73
VRK3-216ENST00000599342 MAB21L3Q8N8X9 362 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 SUMF1Q8NBK3 374 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 ZBTB44Q8NCP5 570 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 TTC8Q8TAM2 541 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 MRPS31Q92665 395 aaKnown RBP10.52□□□□□ -0.73
VRK3-216ENST00000599342 HPS3Q969F9 1004 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 ZFYVE19Q96K21 471 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 FNBP1Q96RU3 617 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 ABCB6Q9NP58 842 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 TMLHEQ9NVH6 421 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 INTS13Q9NVM9 706 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 FAM13BQ9NYF5 915 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 GTSE1Q9NYZ3 720 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 HSPBP1Q9NZL4 362 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 UBE4BO95155 1302 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 CFAP54Q96N23 3096 aa10.52□□□□□ -0.73
VRK3-216ENST00000599342 NUP210Q8TEM1 1887 aaPredicted RBP10.51□□□□□ -0.73
VRK3-216ENST00000599342 MYBPHLA2RUH7 354 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 POLR2DO15514 142 aaKnown RBP10.51□□□□□ -0.73
VRK3-216ENST00000599342 LILRB5O75023 590 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 ZSCAN22P10073 491 aaPredicted RBP10.51□□□□□ -0.73
VRK3-216ENST00000599342 CHRNB1P11230 501 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 HMGA1P17096 107 aaKnown RBP10.51□□□□□ -0.73
VRK3-216ENST00000599342 CXCL12P48061 93 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 ME1P48163 572 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 FOXK2Q01167 660 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 SNRNP35Q16560 246 aaKnown RBP10.51□□□□□ -0.73
VRK3-216ENST00000599342 DGKKQ5KSL6 1271 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 SDHAF4Q5VUM1 108 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 CC2D1AQ6P1N0 951 aaPredicted RBP10.51□□□□□ -0.73
VRK3-216ENST00000599342 CNNM4Q6P4Q7 775 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 SHC4Q6S5L8 630 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 MAMSTRQ6ZN01 415 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 C4orf50Q6ZRC1 276 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 DPH6Q7L8W6 267 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 HS2ST1Q7LGA3 356 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 ERMP1Q7Z2K6 904 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 STKLD1Q8NE28 680 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 GLIS3Q8NEA6 775 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 CXorf38Q8TB03 319 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 NELL1Q92832 810 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 FUBP3Q96I24 572 aaKnown RBP eCLIP10.51□□□□□ -0.73
VRK3-216ENST00000599342 HPDLQ96IR7 371 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 FAM84AQ96KN4 292 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 LRRC3BQ96PB8 259 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 SLC46A2Q9BY10 475 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 SMG9Q9H0W8 520 aaKnown RBP10.51□□□□□ -0.73
VRK3-216ENST00000599342 EPC1Q9H2F5 836 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 KIF9Q9HAQ2 790 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 SIX4Q9UIU6 781 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 GTF3C4Q9UKN8 822 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 RAB23Q9ULC3 237 aa10.51□□□□□ -0.73
VRK3-216ENST00000599342 SMG5Q9UPR3 1016 aaKnown RBP10.51□□□□□ -0.73
VRK3-216ENST00000599342 ZFP91-CNTFA0A0A6YYC7 529 aaPredicted RBP10.5□□□□□ -0.73
VRK3-216ENST00000599342 SOBPA7XYQ1 873 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 GABRDO14764 452 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 NOL4O94818 638 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 F13A1P00488 732 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 F11P03951 625 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 DLATP10515 647 aaKnown RBP10.5□□□□□ -0.73
VRK3-216ENST00000599342 TNNI1P19237 187 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 CYP2F1P24903 491 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 CYP2J2P51589 502 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 SNRPFP62306 86 aaKnown RBP10.5□□□□□ -0.73
VRK3-216ENST00000599342 SATB1Q01826 763 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 TNK2Q07912 1038 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 PON2Q15165 354 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 MAPRE1Q15691 268 aaKnown RBP10.5□□□□□ -0.73
VRK3-216ENST00000599342 DDR2Q16832 855 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 SOWAHAQ2M3V2 549 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 ITPRIPL2Q3MIP1 535 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 CFAP221Q4G0U5 840 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 TXNDC8Q6A555 127 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 ATL3Q6DD88 541 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 UNC13DQ70J99 1090 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 EPM2AIP1Q7L775 607 aaPredicted RBP10.5□□□□□ -0.73
VRK3-216ENST00000599342 OSTM1Q86WC4 334 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 SCN4BQ8IWT1 228 aa10.5□□□□□ -0.73
VRK3-216ENST00000599342 NELFCDQ8IXH7 590 aa10.5□□□□□ -0.73
Retrieved 100 of 20,778 RNA–protein pairs in 14.2 ms