RNA–Protein interactions for RNA: ENST00000598355.1

TRIM28-213, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 714 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-213ENST00000598355 IQCEQ6IPM2 695 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 HS6ST3Q8IZP7 471 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 TCEAL4Q96EI5 215 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 ZNF512Q96ME7 567 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-213ENST00000598355 IPO9Q96P70 1041 aaKnown RBP17.27■□□□□ 0.36
TRIM28-213ENST00000598355 TSG101Q99816 390 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 SYT15Q9BQS2 421 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 MRPL45Q9BRJ2 306 aaKnown RBP17.27■□□□□ 0.36
TRIM28-213ENST00000598355 TMEM8AQ9HCN3 771 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 CRTAC1Q9NQ79 661 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 ASAH2Q9NR71 780 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 ABI2Q9NYB9 513 aaPredicted RBP17.27■□□□□ 0.36
TRIM28-213ENST00000598355 GDE1Q9NZC3 331 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 KIAA1468Q9P260 1216 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 PCDHB5Q9Y5E4 795 aa17.27■□□□□ 0.36
TRIM28-213ENST00000598355 HELZP42694 1942 aaKnown RBP17.27■□□□□ 0.35
TRIM28-213ENST00000598355 PHACTR2O75167 634 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 HLA-DRAP01903 254 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 EPB41P11171 864 aaKnown RBP17.26■□□□□ 0.35
TRIM28-213ENST00000598355 KRT13P13646 458 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 STIM1Q13586 685 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 ZNF667Q5HYK9 610 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 PDZD4Q76G19 769 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-213ENST00000598355 FGF14Q92915 247 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 EEF2KMTQ96G04 330 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 MMS19Q96T76 1030 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 DUSP9Q99956 384 aaKnown RBP17.26■□□□□ 0.35
TRIM28-213ENST00000598355 SMOC2Q9H3U7 446 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 SMYD3Q9H7B4 428 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 ZNF334Q9HCZ1 680 aaPredicted RBP17.26■□□□□ 0.35
TRIM28-213ENST00000598355 LMBRD1Q9NUN5 540 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 GTF3C4Q9UKN8 822 aa17.26■□□□□ 0.35
TRIM28-213ENST00000598355 MYBPHLA2RUH7 354 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 ATP2C2O75185 946 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 FCARP24071 287 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 PIK3CAP42336 1068 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 MAGEA11P43364 429 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 ASPAP45381 313 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 GCLMP48507 274 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 MAPRE1Q15691 268 aaKnown RBP17.25■□□□□ 0.35
TRIM28-213ENST00000598355 SGSM1Q2NKQ1 1148 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 MGAT5BQ3V5L5 792 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 ISM2Q6H9L7 571 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 MTSS1LQ765P7 747 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 ITIH5Q86UX2 942 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 SLC44A3Q8N4M1 653 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 SHKBP1Q8TBC3 707 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 TAS1R2Q8TE23 839 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 RSAD2Q8WXG1 361 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 ING5Q8WYH8 240 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 CEP63Q96MT8 703 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 SEPT5Q99719 369 aaPredicted RBP17.25■□□□□ 0.35
TRIM28-213ENST00000598355 LPIN3Q9BQK8 851 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 BCO2Q9BYV7 579 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 SDCBP2Q9H190 292 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 CLSTN2Q9H4D0 955 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 IL21Q9HBE4 155 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 NUMBLQ9Y6R0 609 aa17.25■□□□□ 0.35
TRIM28-213ENST00000598355 TMEM221A6NGB7 291 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 M0R296 226 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 HMGA1P17096 107 aaKnown RBP17.24■□□□□ 0.35
TRIM28-213ENST00000598355 PSMC1P62191 440 aaKnown RBP17.24■□□□□ 0.35
TRIM28-213ENST00000598355 VEPH1Q14D04 833 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 CYP4A22Q5TCH4 519 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 KRT39Q6A163 491 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 PARM1Q6UWI2 310 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 HFE2Q6ZVN8 426 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 GAREM2Q75VX8 874 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 DNAJB7Q7Z6W7 309 aaPredicted RBP17.24■□□□□ 0.35
TRIM28-213ENST00000598355 MYCBPAPQ8TBZ2 947 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 SLC35C1Q96A29 364 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 MYLPFQ96A32 169 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 FAXDC2Q96IV6 333 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 NXF1Q9UBU9 619 aaKnown RBP17.24■□□□□ 0.35
TRIM28-213ENST00000598355 COQ4Q9Y3A0 265 aa17.24■□□□□ 0.35
TRIM28-213ENST00000598355 BIN1O00499 593 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 FGF19O95750 216 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 SRFP11831 508 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 CYP2F1P24903 491 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 GNL1P36915 607 aaPredicted RBP17.23■□□□□ 0.35
TRIM28-213ENST00000598355 MXI1P50539 228 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 NOP14P78316 857 aaKnown RBP17.23■□□□□ 0.35
TRIM28-213ENST00000598355 INCA1Q0VD86 236 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 VSTM1Q6UX27 236 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 C4orf50Q6ZRC1 276 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 NELFBQ8WX92 580 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 TRMT2BQ96GJ1 504 aaKnown RBP17.23■□□□□ 0.35
TRIM28-213ENST00000598355 PCED1BQ96HM7 432 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 CEP295NLQ96MC4 621 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 ASB16Q96NS5 453 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 PI4K2AQ9BTU6 479 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 SNX25Q9H3E2 840 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 DPEP3Q9H4B8 488 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 TRPV4Q9HBA0 871 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 APOBEC3GQ9HC16 384 aaKnown RBP17.23■□□□□ 0.35
TRIM28-213ENST00000598355 SLC2A4RGQ9NR83 387 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 MUC6Q6W4X9 2439 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 TICRRQ7Z2Z1 1910 aa17.23■□□□□ 0.35
TRIM28-213ENST00000598355 BICDL2A1A5D9 508 aa17.22■□□□□ 0.35
TRIM28-213ENST00000598355 NARSO43776 548 aaKnown RBP17.22■□□□□ 0.35
Retrieved 100 of 20,778 RNA–protein pairs in 18.5 ms