RNA–Protein interactions for RNA: ENST00000597995.1

TRIM28-212, Transcript of tripartite motif containing 28, humanhuman

TSL 2

Gene TRIM28, Length 702 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-212ENST00000597995 AVPR1AP37288 418 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 NLRP12P59046 1061 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 POSTNQ15063 836 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 WSCD1Q658N2 575 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 CACNA2D4Q7Z3S7 1137 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 TMEM150AQ86TG1 271 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 SMG9Q9H0W8 520 aaKnown RBP13.49□□□□□ -0.25
TRIM28-212ENST00000597995 ZHX3Q9H4I2 956 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 ZSCAN16Q9H4T2 348 aaPredicted RBP13.49□□□□□ -0.25
TRIM28-212ENST00000597995 HPS4Q9NQG7 708 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 PCDHB5Q9Y5E4 795 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 SDK1Q7Z5N4 2213 aa13.49□□□□□ -0.25
TRIM28-212ENST00000597995 CNOT1A5YKK6 2376 aaKnown RBP13.49□□□□□ -0.25
TRIM28-212ENST00000597995 KIF26AQ9ULI4 1882 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 SPAG17Q6Q759 2223 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 RPP40O75818 363 aaKnown RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 IL18RAPO95256 599 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 CSH1P0DML2 217 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 CSH2P0DML3 217 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 PNPLA4P41247 253 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 RAP1GAPP47736 663 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 NASPP49321 788 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 BFSP1Q12934 665 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 ZNF268Q14587 947 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 NFE2Q16621 373 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 SV2CQ496J9 727 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 ZC2HC1CQ53FD0 456 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 IL31Q6EBC2 164 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 FSTL4Q6MZW2 842 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 CRELD2Q6UXH1 353 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 ZNF720Q7Z2F6 126 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 MON1AQ86VX9 555 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 CAMKK1Q8N5S9 505 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 MAB21L3Q8N8X9 362 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 KRI1Q8N9T8 703 aaKnown RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 LINC00301Q8NCQ3 95 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 USP13Q92995 863 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 EXOC4Q96A65 974 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 HVCN1Q96D96 273 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 ZNF560Q96MR9 790 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 TDP1Q9NUW8 608 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 ABI2Q9NYB9 513 aaPredicted RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 TFIP11Q9UBB9 837 aaKnown RBP13.48□□□□□ -0.25
TRIM28-212ENST00000597995 SLC8A2Q9UPR5 921 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 PCDHGA5Q9Y5G8 931 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 DENND4CQ5VZ89 1909 aa13.48□□□□□ -0.25
TRIM28-212ENST00000597995 GREB1Q4ZG55 1949 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 MYMKA6NI61 221 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 AXIN1O15169 862 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 EPN2O95208 641 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 DRD1P21728 446 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 HOXC13P31276 330 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 TSPY1Q01534 308 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 PDGFRLQ15198 375 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 FBXO43Q4G163 708 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 AASDHQ4L235 1098 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-212ENST00000597995 CC2D1AQ6P1N0 951 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-212ENST00000597995 PKN3Q6P5Z2 889 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 EFCAB13Q8IY85 973 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 C12orf50Q8NA57 414 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-212ENST00000597995 RASSF8Q8NHQ8 419 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 LEO1Q8WVC0 666 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-212ENST00000597995 MRPS31Q92665 395 aaKnown RBP13.47□□□□□ -0.25
TRIM28-212ENST00000597995 DNAJC19Q96DA6 116 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 CHFRQ96EP1 664 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 ZC3H10Q96K80 434 aaKnown RBP13.47□□□□□ -0.25
TRIM28-212ENST00000597995 PANK2Q9BZ23 570 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 ARRDC1-AS1Q9H2J1 176 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 IKZF4Q9H2S9 585 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 EBF3Q9H4W6 596 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 ABCB6Q9NP58 842 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 UXTQ9UBK9 157 aaPredicted RBP13.47□□□□□ -0.25
TRIM28-212ENST00000597995 STK17AQ9UEE5 414 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 CCL26Q9Y258 94 aa13.47□□□□□ -0.25
TRIM28-212ENST00000597995 ZNF638Q14966 1978 aaKnown RBP13.46□□□□□ -0.25
TRIM28-212ENST00000597995 OTOL1A6NHN0 477 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-212ENST00000597995 TISP43B9A030 160 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 TM4SF5O14894 197 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 PRPF40AO75400 957 aaKnown RBP13.46□□□□□ -0.25
TRIM28-212ENST00000597995 PPP1R37O75864 691 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 CCDC192P0DO97 292 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 ADSSP30520 456 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 CDR1P51861 262 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 RPL10AP62906 217 aaKnown RBP13.46□□□□□ -0.25
TRIM28-212ENST00000597995 PKP1Q13835 747 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 ST3GAL2Q16842 350 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 FOXD4L5Q5VV16 416 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-212ENST00000597995 RRAGBQ5VZM2 374 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 TXNDC8Q6A555 127 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 DYMQ7RTS9 669 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 KBTBD6Q86V97 674 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 SPATA18Q8TC71 538 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 FOXD4L4Q8WXT5 416 aaPredicted RBP13.46□□□□□ -0.25
TRIM28-212ENST00000597995 POMGNT1Q8WZA1 660 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 MYRFLQ96LU7 910 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 ACBD6Q9BR61 282 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 STRA6Q9BX79 667 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 TMLHEQ9NVH6 421 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 SEL1LQ9UBV2 794 aa13.46□□□□□ -0.25
TRIM28-212ENST00000597995 CCDC39Q9UFE4 941 aa13.46□□□□□ -0.25
Retrieved 100 of 20,778 RNA–protein pairs in 29.6 ms