RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 SETSIPP0DME0 302 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 UNGP13051 313 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-209ENST00000597423 IGFBP6P24592 240 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-209ENST00000597423 GALCP54803 685 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 HTRA4P83105 476 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-209ENST00000597423 KRT17Q04695 432 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 ORC1Q13415 861 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 PTPN14Q15678 1187 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 NAA35Q5VZE5 725 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 FUT10Q6P4F1 479 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 OSTM1Q86WC4 334 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 PHF13Q86YI8 300 aaPredicted RBP16.17■□□□□ 0.18
TRIM28-209ENST00000597423 TMEM169Q96HH4 297 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 IGSF21Q96ID5 467 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 SYT15Q9BQS2 421 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 RC3H2Q9HBD1 1191 aaKnown RBP16.17■□□□□ 0.18
TRIM28-209ENST00000597423 LZTFL1Q9NQ48 299 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 NENFQ9UMX5 172 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 BRCA2P51587 3418 aa16.17■□□□□ 0.18
TRIM28-209ENST00000597423 BTNL10A8MVZ5 291 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 M0QYV0 167 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 TLL1O43897 1013 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 MICAL2O94851 1124 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 CALCAP01258 141 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 CALB1P05937 261 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 FGFR3P22607 806 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 CDH5P33151 784 aaPredicted RBP16.16■□□□□ 0.18
TRIM28-209ENST00000597423 NAP1L1P55209 391 aaKnown RBP16.16■□□□□ 0.18
TRIM28-209ENST00000597423 CENPCQ03188 943 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 C1QBPQ07021 282 aaKnown RBP16.16■□□□□ 0.18
TRIM28-209ENST00000597423 USP41Q3LFD5 358 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 KIAA1841Q6NSI8 718 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 ANKS3Q6ZW76 656 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 ERICH1Q86X53 443 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 CEP57Q86XR8 500 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 PASD1Q8IV76 773 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 C12orf29Q8N999 325 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 ANKRD52Q8NB46 1076 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 MYCBPAPQ8TBZ2 947 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 CPA5Q8WXQ8 436 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 HNRNPABQ99729 332 aaKnown RBP16.16■□□□□ 0.18
TRIM28-209ENST00000597423 MED10Q9BTT4 135 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 TTPALQ9BTX7 342 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 SYNCQ9H7C4 482 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 MARCH5Q9NX47 278 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 ADAM22Q9P0K1 906 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 MYO1AQ9UBC5 1043 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 RWDD3Q9Y3V2 267 aa16.16■□□□□ 0.18
TRIM28-209ENST00000597423 A0A0A6YYK5 440 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 NT5C1B-RDH14C9J2C7 533 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 ACAT1P24752 427 aaKnown RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 NOP2P46087 812 aaKnown RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 NOMO3P69849 1222 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 PLCB3Q01970 1234 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 SMARCB1Q12824 385 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 NFE2Q16621 373 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 GOLGA7BQ2TAP0 167 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 INTS6LQ5JSJ4 861 aaKnown RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 VARS2Q5ST30 1063 aaKnown RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 PPP1R26Q5T8A7 1209 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 ZNF280DQ6N043 979 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 DENND1BQ6P3S1 775 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 C4orf50Q6ZRC1 276 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 TMCO2Q7Z6W1 182 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 RHOT2Q8IXI1 618 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 SLC39A11Q8N1S5 342 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 C17orf53Q8N3J3 647 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 COLGALT1Q8NBJ5 622 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 STK32AQ8WU08 396 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 ZSWIM1Q9BR11 485 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 GPR62Q9BZJ7 368 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 DPEP3Q9H4B8 488 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 CXXC1Q9P0U4 656 aaPredicted RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 TSPAN16Q9UKR8 245 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 STRIP2Q9ULQ0 834 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 GUCA1BQ9UMX6 200 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 SSX2IPQ9Y2D8 614 aa16.15■□□□□ 0.18
TRIM28-209ENST00000597423 MRPL42Q9Y6G3 142 aaKnown RBP16.15■□□□□ 0.18
TRIM28-209ENST00000597423 SCN1AP35498 2009 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 MICAL3Q7RTP6 2002 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 F8W810 466 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 ABCB4P21439 1286 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 TKTP29401 623 aaKnown RBP16.14■□□□□ 0.17
TRIM28-209ENST00000597423 BCAT1P54687 386 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 BST2Q10589 180 aaKnown RBP16.14■□□□□ 0.17
TRIM28-209ENST00000597423 MRPL58Q14197 206 aaKnown RBP16.14■□□□□ 0.17
TRIM28-209ENST00000597423 CTXN3Q4LDR2 81 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 MDH1BQ5I0G3 518 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 FAM171BQ6P995 826 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 DDX53Q86TM3 631 aaKnown RBP16.14■□□□□ 0.17
TRIM28-209ENST00000597423 MCOLN2Q8IZK6 566 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 SLC2A14Q8TDB8 520 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 IPO4Q8TEX9 1081 aaKnown RBP16.14■□□□□ 0.17
TRIM28-209ENST00000597423 SECISBP2LQ93073 1101 aaKnown RBP16.14■□□□□ 0.17
TRIM28-209ENST00000597423 MRPL47Q9HD33 250 aaKnown RBP16.14■□□□□ 0.17
TRIM28-209ENST00000597423 FAM49BQ9NUQ9 324 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 TAS2R14Q9NYV8 317 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 WDR35Q9P2L0 1181 aa16.14■□□□□ 0.17
TRIM28-209ENST00000597423 TDRD15B5MCY1 1934 aaKnown RBP16.13■□□□□ 0.17
TRIM28-209ENST00000597423 USP27XA6NNY8 438 aa16.13■□□□□ 0.17
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms