RNA–Protein interactions for RNA: ENST00000596842.5

UPF1-204, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 2

Gene UPF1, Length 3,825 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-204ENST00000596842 IQCGQ9H095 443 aaKnown RBP16.04■□□□□ 0.16
UPF1-204ENST00000596842 HEY2Q9UBP5 337 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 KIF13BQ9NQT8 1826 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 CCDC160A6NGH7 325 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 KLRC2P26717 231 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 OGDHQ02218 1023 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 LMNB2Q03252 620 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 TAS1R3Q7RTX0 852 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 KATNAL2Q8IYT4 538 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 B4GALNT2Q8NHY0 566 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 SLCO2A1Q92959 643 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 CFAP36Q96G28 342 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 FAM111AQ96PZ2 611 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 MRIQ9BWK5 157 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 JPH1Q9HDC5 661 aaPredicted RBP16.04■□□□□ 0.16
UPF1-204ENST00000596842 ANKEF1Q9NU02 776 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 PSMC3IPQ9P2W1 217 aaPredicted RBP16.04■□□□□ 0.16
UPF1-204ENST00000596842 GM2AP17900 193 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 GCAP28676 217 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 SFNP31947 248 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 MSS51Q4VC12 460 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 AKT1S1Q96B36 256 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 PAFAH2Q99487 392 aa16.04■□□□□ 0.16
UPF1-204ENST00000596842 TRPC5Q9UL62 973 aaPredicted RBP16.04■□□□□ 0.16
UPF1-204ENST00000596842 STAM2O75886 525 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 MYL6P60660 151 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 FNBP1LQ5T0N5 605 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 ASRGL1Q7L266 308 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 TCRBV7S3A2A0A539 114 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 EDF1O60869 148 aaKnown RBP16.03■□□□□ 0.16
UPF1-204ENST00000596842 DGAT1O75907 488 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 MT-ND3P03897 115 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 PSAPP07602 524 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 CD48P09326 243 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 GLRA2P23416 452 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 RAP1GAPP47736 663 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 ACTR2P61160 394 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 EMC2Q15006 297 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 TCEAL1Q15170 157 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 RASIP1Q5U651 963 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 RCOR2Q8IZ40 523 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 MCPH1Q8NEM0 835 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 SLC13A1Q9BZW2 595 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 SLC5A4Q9NY91 659 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 LGALS13Q9UHV8 139 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 ATRNL1Q5VV63 1379 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 ZNF568Q3ZCX4 644 aa16.03■□□□□ 0.16
UPF1-204ENST00000596842 PRR11Q96HE9 360 aaPredicted RBP16.03■□□□□ 0.16
UPF1-204ENST00000596842 DENND2DQ9H6A0 471 aaPredicted RBP16.03■□□□□ 0.16
UPF1-204ENST00000596842 AVILO75366 819 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 GRAP2O75791 330 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 CYP1A1P04798 512 aaPredicted RBP16.02■□□□□ 0.16
UPF1-204ENST00000596842 TRIM74Q86UV6 250 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 TRIM73Q86UV7 250 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 SLC9A2Q9UBY0 812 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 TTLL13PA6NNM8 815 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 GYG2O15488 501 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 CCND2P30279 289 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 RASSF2P50749 326 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 PDK4Q16654 411 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 WDR72Q3MJ13 1102 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 KCTD6Q8NC69 237 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 ASAP3Q8TDY4 903 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 SLC7A3Q8WY07 619 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 RNPEPL1Q9HAU8 725 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 STARD13Q9Y3M8 1113 aa16.02■□□□□ 0.16
UPF1-204ENST00000596842 LPXNO60711 386 aa16.02■□□□□ 0.15
UPF1-204ENST00000596842 C4BPAP04003 597 aaKnown RBP16.02■□□□□ 0.15
UPF1-204ENST00000596842 SERPINB3P29508 390 aa16.02■□□□□ 0.15
UPF1-204ENST00000596842 RFC1P35251 1148 aaPredicted RBP16.02■□□□□ 0.15
UPF1-204ENST00000596842 GEMIN4P57678 1058 aaKnown RBP16.02■□□□□ 0.15
UPF1-204ENST00000596842 TAF5Q15542 800 aa16.02■□□□□ 0.15
UPF1-204ENST00000596842 TFDP3Q5H9I0 405 aa16.02■□□□□ 0.15
UPF1-204ENST00000596842 SCYL2Q6P3W7 929 aa16.02■□□□□ 0.15
UPF1-204ENST00000596842 ALLCQ8N6M5 410 aa16.02■□□□□ 0.15
UPF1-204ENST00000596842 TTC25Q96NG3 672 aa16.02■□□□□ 0.15
UPF1-204ENST00000596842 HAPLN2Q9GZV7 340 aa16.02■□□□□ 0.15
UPF1-204ENST00000596842 SDAD1Q9NVU7 687 aaKnown RBP eCLIP16.02■□□□□ 0.15
UPF1-204ENST00000596842 XPO7Q9UIA9 1087 aaKnown RBP16.02■□□□□ 0.15
UPF1-204ENST00000596842 FOCADQ5VW36 1801 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 BGNP21810 368 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 VCPP55072 806 aaKnown RBP16.01■□□□□ 0.15
UPF1-204ENST00000596842 PLEKHG4Q58EX7 1191 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 TTC7BQ86TV6 843 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 LMNTD2Q8IXW0 634 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 RHBDL2Q9NX52 303 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 SMG5Q9UPR3 1016 aaKnown RBP16.01■□□□□ 0.15
UPF1-204ENST00000596842 FAM155BO75949 473 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 HAUS5O94927 633 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 PHBP35232 272 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 ARL4CP56559 192 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 AGGF1Q8N302 714 aaeCLIP16.01■□□□□ 0.15
UPF1-204ENST00000596842 PPM1NQ8N819 430 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 PTPRN2Q92932 1015 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 SLC38A10Q9HBR0 1119 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 CSDE1O75534 798 aaKnown RBP16.01■□□□□ 0.15
UPF1-204ENST00000596842 INHBAP08476 426 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 GARTP22102 1010 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 CALB2P22676 271 aa16.01■□□□□ 0.15
UPF1-204ENST00000596842 PTDSS1P48651 473 aaKnown RBP16.01■□□□□ 0.15
Retrieved 100 of 20,778 RNA–protein pairs in 15.2 ms