RNA–Protein interactions for RNA: ENST00000596549.5

LIG1-212, Transcript of DNA ligase 1, humanhuman

TSL 4

Gene LIG1, Length 580 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG1-212ENST00000596549 CASP4P49662 377 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 SNRPFP62306 86 aaKnown RBP14.01□□□□□ -0.17
LIG1-212ENST00000596549 MYL7Q01449 175 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 TSPY1Q01534 308 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 SMARCB1Q12824 385 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 VEPH1Q14D04 833 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 DUOXA2Q1HG44 320 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 SDHAF4Q5VUM1 108 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 HS2ST1Q7LGA3 356 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 TRAPPC11Q7Z392 1133 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 ITIH5Q86UX2 942 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 DCP1BQ8IZD4 617 aaKnown RBP14.01□□□□□ -0.17
LIG1-212ENST00000596549 SPATA18Q8TC71 538 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 FAM200AQ8TCP9 573 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 DEPDC1BQ8WUY9 529 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 ZNF516Q92618 1163 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 HPDLQ96IR7 371 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 KCTD10Q9H3F6 313 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 ATXN3LQ9H3M9 355 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 BRD9Q9H8M2 597 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 GDPD2Q9HCC8 539 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 EXOC1Q9NV70 894 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 PCDHB5Q9Y5E4 795 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 VPS13AQ96RL7 3174 aa14.01□□□□□ -0.17
LIG1-212ENST00000596549 ATP2C2O75185 946 aa14□□□□□ -0.17
LIG1-212ENST00000596549 CST3P01034 146 aaPredicted RBP14□□□□□ -0.17
LIG1-212ENST00000596549 GDI1P31150 447 aa14□□□□□ -0.17
LIG1-212ENST00000596549 SYKP43405 635 aa14□□□□□ -0.17
LIG1-212ENST00000596549 PSMC1P62191 440 aaKnown RBP14□□□□□ -0.17
LIG1-212ENST00000596549 UBXN2BQ14CS0 331 aa14□□□□□ -0.17
LIG1-212ENST00000596549 NFE2Q16621 373 aaPredicted RBP14□□□□□ -0.17
LIG1-212ENST00000596549 GPR158Q5T848 1215 aa14□□□□□ -0.17
LIG1-212ENST00000596549 FRMD5Q7Z6J6 570 aa14□□□□□ -0.17
LIG1-212ENST00000596549 GPIHBP1Q8IV16 184 aa14□□□□□ -0.17
LIG1-212ENST00000596549 ARID3BQ8IVW6 561 aaPredicted RBP14□□□□□ -0.17
LIG1-212ENST00000596549 ZNF687Q8N1G0 1237 aa14□□□□□ -0.17
LIG1-212ENST00000596549 CCDC127Q96BQ5 260 aa14□□□□□ -0.17
LIG1-212ENST00000596549 SHDQ96IW2 340 aa14□□□□□ -0.17
LIG1-212ENST00000596549 LRRC3BQ96PB8 259 aa14□□□□□ -0.17
LIG1-212ENST00000596549 TRMT61BQ9BVS5 477 aaKnown RBP14□□□□□ -0.17
LIG1-212ENST00000596549 GPR88Q9GZN0 384 aa14□□□□□ -0.17
LIG1-212ENST00000596549 CGNQ9P2M7 1197 aaKnown RBP14□□□□□ -0.17
LIG1-212ENST00000596549 GTF3C4Q9UKN8 822 aa14□□□□□ -0.17
LIG1-212ENST00000596549 MYBPHLA2RUH7 354 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 LRRIQ3A6PVS8 624 aaPredicted RBP13.99□□□□□ -0.17
LIG1-212ENST00000596549 GFRA3O60609 400 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 EXOC3O60645 756 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 PRPF40AO75400 957 aaKnown RBP13.99□□□□□ -0.17
LIG1-212ENST00000596549 F11P03951 625 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 TNNI1P19237 187 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 WARSP23381 471 aaKnown RBP13.99□□□□□ -0.17
LIG1-212ENST00000596549 CYP2F1P24903 491 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 LMO2P25791 158 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 CDC25CP30307 473 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 FCHO2Q0JRZ9 810 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 MYO1EQ12965 1108 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 FZD5Q13467 585 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 CFAP221Q4G0U5 840 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 FAM171BQ6P995 826 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 DPH6Q7L8W6 267 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 ASCL5Q7RTU5 278 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 MFSD6LQ8IWD5 586 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 MAML2Q8IZL2 1156 aaPredicted RBP13.99□□□□□ -0.17
LIG1-212ENST00000596549 RIN3Q8TB24 985 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 MYLPFQ96A32 169 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 FNBP1Q96RU3 617 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 SYT15Q9BQS2 421 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 MRPL45Q9BRJ2 306 aaKnown RBP13.99□□□□□ -0.17
LIG1-212ENST00000596549 SMG9Q9H0W8 520 aaKnown RBP13.99□□□□□ -0.17
LIG1-212ENST00000596549 XYLT2Q9H1B5 865 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 ABCB6Q9NP58 842 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 CRTAC1Q9NQ79 661 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 TRPV5Q9NQA5 729 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 DMAC2Q9NW81 257 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 USP25Q9UHP3 1055 aa13.99□□□□□ -0.17
LIG1-212ENST00000596549 MYH10P35580 1976 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 A0A1W2PQ27 194 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 A0A1W2PQ64 194 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 A0A1W2PQD8 194 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 PRR23AA6NEV1 266 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 NOL4O94818 638 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 FGF19O95750 216 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 RPN1P04843 607 aaKnown RBP13.98□□□□□ -0.17
LIG1-212ENST00000596549 MYL1P05976 194 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 PCSK1P29120 753 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 LHX1P48742 406 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 NLRP12P59046 1061 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 DPYDQ12882 1025 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 DDR2Q16832 855 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 TDRD10Q5VZ19 366 aaKnown RBP13.98□□□□□ -0.17
LIG1-212ENST00000596549 KRBA2Q6ZNG9 492 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 SLC9A9Q8IVB4 645 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 FSIP1Q8NA03 581 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 TMEM174Q8WUU8 243 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 IRF7Q92985 503 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 ZFYVE19Q96K21 471 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 OSBPL6Q9BZF3 934 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 TASP1Q9H6P5 420 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 CACNA1IQ9P0X4 2223 aa13.98□□□□□ -0.17
LIG1-212ENST00000596549 FAM170BA6NMN3 283 aa13.97□□□□□ -0.17
Retrieved 100 of 20,778 RNA–protein pairs in 35.1 ms