RNA–Protein interactions for RNA: ENST00000574029.5

VPS53-216, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4 BASIC

Gene VPS53, Length 585 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-216ENST00000574029 SEMA4GQ9NTN9 838 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 CCL26Q9Y258 94 aa22.69■■□□□ 1.22
VPS53-216ENST00000574029 POLR2BP30876 1174 aaKnown RBP22.68■■□□□ 1.22
VPS53-216ENST00000574029 HOXC13P31276 330 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 AVPR1AP37288 418 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 GPR15P49685 360 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 TFAMQ00059 246 aaKnown RBP22.68■■□□□ 1.22
VPS53-216ENST00000574029 CUL4AQ13619 759 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 RUNX3Q13761 415 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 TMEM196Q5HYL7 178 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 RRAGBQ5VZM2 374 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 SV2BQ7L1I2 683 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 C1orf127Q8N9H9 656 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 CXorf38Q8TB03 319 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 NETO1Q8TDF5 533 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 CHFRQ96EP1 664 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 ACBD6Q9BR61 282 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 PI4K2AQ9BTU6 479 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 KIF9Q9HAQ2 790 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 OLFML3Q9NRN5 406 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 TBC1D7Q9P0N9 293 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 AGAP1Q9UPQ3 857 aa22.68■■□□□ 1.22
VPS53-216ENST00000574029 VPS37CA5D8V6 355 aaPredicted RBP22.67■■□□□ 1.22
VPS53-216ENST00000574029 PRPF40AO75400 957 aaKnown RBP22.67■■□□□ 1.22
VPS53-216ENST00000574029 LDHAP00338 332 aaKnown RBP22.67■■□□□ 1.22
VPS53-216ENST00000574029 ITGB3P05106 788 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 CSH1P0DML2 217 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 CSH2P0DML3 217 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 GARTP22102 1010 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 PRR23CQ6ZRP0 262 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 MON1AQ86VX9 555 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 LRRC52Q8N7C0 313 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 CACTINQ8WUQ7 758 aaKnown RBP22.67■■□□□ 1.22
VPS53-216ENST00000574029 SAAL1Q96ER3 474 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 ABCB6Q9NP58 842 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 TDP1Q9NUW8 608 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 L1RE1Q9UN81 338 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 RALGAPA1Q6GYQ0 2036 aa22.67■■□□□ 1.22
VPS53-216ENST00000574029 OTOL1A6NHN0 477 aaPredicted RBP22.66■■□□□ 1.22
VPS53-216ENST00000574029 TRDMT1O14717 391 aaKnown RBP22.66■■□□□ 1.22
VPS53-216ENST00000574029 SLC30A4O14863 429 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 EXTL3O43909 919 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 GCNT3O95395 438 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 CASP5P51878 434 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 BFSP1Q12934 665 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 ZNF268Q14587 947 aaPredicted RBP22.66■■□□□ 1.22
VPS53-216ENST00000574029 TXNDC8Q6A555 127 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 SCARA3Q6AZY7 606 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 TRIM68Q6AZZ1 485 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 FSTL4Q6MZW2 842 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 PKN3Q6P5Z2 889 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 TMEM86AQ8N2M4 240 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 FAM160A2Q8N612 972 aaPredicted RBP22.66■■□□□ 1.22
VPS53-216ENST00000574029 STKLD1Q8NE28 680 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 RIN3Q8TB24 985 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 MRPS31Q92665 395 aaKnown RBP22.66■■□□□ 1.22
VPS53-216ENST00000574029 CLIC6Q96NY7 704 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 PKMYT1Q99640 499 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 EBF3Q9H4W6 596 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 GDAP2Q9NXN4 497 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 DDX43Q9NXZ2 648 aaKnown RBP22.66■■□□□ 1.22
VPS53-216ENST00000574029 RBAKQ9NYW8 714 aaPredicted RBP22.66■■□□□ 1.22
VPS53-216ENST00000574029 PCDHB13Q9Y5F0 798 aa22.66■■□□□ 1.22
VPS53-216ENST00000574029 LOC105378220A0A1B0GUY1 285 aaPredicted RBP22.65■■□□□ 1.22
VPS53-216ENST00000574029 FRMD3A2A2Y4 597 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 HUS1O60921 280 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 NOL4O94818 638 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 PDCP20941 246 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 TXLNAP40222 546 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 RPL10AP62906 217 aaKnown RBP22.65■■□□□ 1.22
VPS53-216ENST00000574029 MYL7Q01449 175 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 GRSF1Q12849 480 aaKnown RBP eCLIP22.65■■□□□ 1.224e-9■■■■■ 30.8
VPS53-216ENST00000574029 ALCAMQ13740 583 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 INTS6LQ5JSJ4 861 aaKnown RBP22.65■■□□□ 1.22
VPS53-216ENST00000574029 SDHAF4Q5VUM1 108 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 CEP68Q76N32 757 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 SPATA18Q8TC71 538 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 TRMT2BQ96GJ1 504 aaKnown RBP22.65■■□□□ 1.22
VPS53-216ENST00000574029 MYRFLQ96LU7 910 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 ITGA11Q9UKX5 1188 aa22.65■■□□□ 1.22
VPS53-216ENST00000574029 MAGED2Q9UNF1 606 aaPredicted RBP22.65■■□□□ 1.22
VPS53-216ENST00000574029 NCOR2Q9Y618 2525 aa22.64■■□□□ 1.22
VPS53-216ENST00000574029 CCDC163A0A0D9SF12 145 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 FOXD2O60548 495 aaPredicted RBP22.64■■□□□ 1.21
VPS53-216ENST00000574029 ATG13O75143 517 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 TADA3O75528 432 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 CYP2F1P24903 491 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 RESTQ13127 1097 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 DDR2Q16832 855 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 OSTM1Q86WC4 334 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 CSGALNACT2Q8N6G5 542 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 CBWD1Q9BRT8 395 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 FGFBP2Q9BYJ0 223 aa22.64■■□□□ 1.21
VPS53-216ENST00000574029 UXTQ9UBK9 157 aaPredicted RBP22.64■■□□□ 1.21
VPS53-216ENST00000574029 GOLGA8IPA6NC78 632 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 GOLGA8JA6NMD2 632 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 ARSAP15289 507 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 ACAT1P24752 427 aaKnown RBP22.63■■□□□ 1.21
VPS53-216ENST00000574029 AMPD2Q01433 879 aa22.63■■□□□ 1.21
VPS53-216ENST00000574029 PDGFRLQ15198 375 aa22.63■■□□□ 1.21
Retrieved 100 of 20,778 RNA–protein pairs in 41.5 ms