RNA–Protein interactions for RNA: ENST00000572290.1

NUP88-204, Transcript of nucleoporin 88, humanhuman

TSL 5

Gene NUP88, Length 615 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
NUP88-204ENST00000572290 VRTNQ9H8Y1 702 aa21.56■■□□□ 1.04
NUP88-204ENST00000572290 ZNF334Q9HCZ1 680 aaPredicted RBP21.56■■□□□ 1.04
NUP88-204ENST00000572290 ABCB6Q9NP58 842 aa21.56■■□□□ 1.04
NUP88-204ENST00000572290 NXF1Q9UBU9 619 aaKnown RBP21.56■■□□□ 1.04
NUP88-204ENST00000572290 ARIH1Q9Y4X5 557 aaPredicted RBP21.56■■□□□ 1.04
NUP88-204ENST00000572290 TSC2P49815 1807 aa21.56■■□□□ 1.04
NUP88-204ENST00000572290 IKBKBO14920 756 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 CLSTN1O94985 981 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 PDGFRBP09619 1106 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 KRT13P13646 458 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 GABRR2P28476 465 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 AVPR2P30518 371 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 PSMC2P35998 433 aaKnown RBP21.55■■□□□ 1.04
NUP88-204ENST00000572290 GNL1P36915 607 aaPredicted RBP21.55■■□□□ 1.04
NUP88-204ENST00000572290 PRCPP42785 496 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 VAMP7P51809 220 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 VCPP55072 806 aaKnown RBP21.55■■□□□ 1.04
NUP88-204ENST00000572290 PSMC1P62191 440 aaKnown RBP21.55■■□□□ 1.04
NUP88-204ENST00000572290 CCDC142Q17RM4 750 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 ZNF699Q32M78 642 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 ZACNQ401N2 412 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 FAM78AQ5JUQ0 283 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 TANGO2Q6ICL3 276 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 FAM171BQ6P995 826 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 OR6B3Q8NGW1 331 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 SMARCD2Q92925 531 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 ELSPBP1Q96BH3 223 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 FUBP3Q96I24 572 aaKnown RBP eCLIP21.55■■□□□ 1.04
NUP88-204ENST00000572290 ZSWIM3Q96MP5 696 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 ASB16Q96NS5 453 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 KCNH6Q9H252 994 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 ATXN3LQ9H3M9 355 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 SLITRK6Q9H5Y7 841 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 ZFP14Q9HCL3 533 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 CA14Q9ULX7 337 aa21.55■■□□□ 1.04
NUP88-204ENST00000572290 ATP2C2O75185 946 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 VNN1O95497 513 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 FCARP24071 287 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 CYP2F1P24903 491 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 GPR15P49685 360 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 RPL10AP62906 217 aaKnown RBP21.54■■□□□ 1.04
NUP88-204ENST00000572290 MAPRE1Q15691 268 aaKnown RBP21.54■■□□□ 1.04
NUP88-204ENST00000572290 CFAP221Q4G0U5 840 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 ZNF667Q5HYK9 610 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 C1orf220Q5T0J3 134 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 C4orf50Q6ZRC1 276 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 SV2AQ7L0J3 742 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 FLCNQ8NFG4 579 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 PLA2G2FQ9BZM2 168 aa21.54■■□□□ 1.04
NUP88-204ENST00000572290 CETN3O15182 167 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 ENPEPQ07075 957 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 SGSM1Q2NKQ1 1148 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 GAREM2Q75VX8 874 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 ZSCAN18Q8TBC5 510 aaPredicted RBP21.53■■□□□ 1.04
NUP88-204ENST00000572290 MYLPFQ96A32 169 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 GCNAQ96QF7 691 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 TSG101Q99816 390 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 CRTAC1Q9NQ79 661 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 MAGEC2Q9UBF1 373 aaPredicted RBP21.53■■□□□ 1.04
NUP88-204ENST00000572290 TCHHQ07283 1943 aa21.53■■□□□ 1.04
NUP88-204ENST00000572290 KRBA1A5PL33 1030 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 TRIM49P0CI25 452 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 TRIM49CP0CI26 452 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 CSH1P0DML2 217 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 CSH2P0DML3 217 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 NPR3P17342 541 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 CDC25CP30307 473 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 CLCN5P51795 746 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 PFKPQ01813 784 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 DDR2Q16832 855 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 ARHGAP15Q53QZ3 475 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 SDHAF4Q5VUM1 108 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 ASTLQ6HA08 431 aaPredicted RBP21.52■■□□□ 1.04
NUP88-204ENST00000572290 ADSSL1Q8N142 457 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 MKNK1Q9BUB5 465 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 TRPV4Q9HBA0 871 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 IL21Q9HBE4 155 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 ARHGEF3Q9NR81 526 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 NME7Q9Y5B8 376 aa21.52■■□□□ 1.04
NUP88-204ENST00000572290 A8MXQ7 604 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 P4HA1P13674 534 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 HMGA1P17096 107 aaKnown RBP21.51■■□□□ 1.03
NUP88-204ENST00000572290 RFX1P22670 979 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 PIK3CAP42336 1068 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 MAGEA11P43364 429 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 CYP27A1Q02318 531 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 STXBP5Q5T5C0 1151 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 GPR158Q5T848 1215 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 IER5LQ5T953 404 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 CWF19L1Q69YN2 538 aaKnown RBP21.51■■□□□ 1.03
NUP88-204ENST00000572290 SCN4BQ8IWT1 228 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 MYCBPAPQ8TBZ2 947 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 TAF4BQ92750 862 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 ELMO3Q96BJ8 720 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 EEF2KMTQ96G04 330 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 SMYD3Q9H7B4 428 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 MAN1B1Q9UKM7 699 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 TRIOO75962 3097 aa21.51■■□□□ 1.03
NUP88-204ENST00000572290 STK25O00506 426 aa21.5■■□□□ 1.03
NUP88-204ENST00000572290 HLA-DRAP01903 254 aa21.5■■□□□ 1.03
Retrieved 100 of 20,778 RNA–protein pairs in 46.1 ms