RNA–Protein interactions for RNA: ENST00000569063.5

CLK3-225, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 833 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-225ENST00000569063 SLC44A4Q53GD3 710 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 GUF1Q8N442 669 aaKnown RBP21.74■■□□□ 1.07
CLK3-225ENST00000569063 ENGASEQ8NFI3 743 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 GIPC2Q8TF65 315 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 MMS19Q96T76 1030 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 XYLT2Q9H1B5 865 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 IL21Q9HBE4 155 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 CDH9Q9ULB4 789 aa21.74■■□□□ 1.07
CLK3-225ENST00000569063 MYBPHLA2RUH7 354 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 LRRIQ3A6PVS8 624 aaPredicted RBP21.73■■□□□ 1.07
CLK3-225ENST00000569063 TACC1O75410 805 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 C4BPAP04003 597 aaKnown RBP21.73■■□□□ 1.07
CLK3-225ENST00000569063 LMO2P25791 158 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 MYL6P60660 151 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 PRKCQQ04759 706 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 WDR72Q3MJ13 1102 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 VITQ6UXI7 678 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 TMC2Q8TDI7 906 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 SYAP1Q96A49 352 aaPredicted RBP21.73■■□□□ 1.07
CLK3-225ENST00000569063 E2F7Q96AV8 911 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 FUBP3Q96I24 572 aaKnown RBP eCLIP21.73■■□□□ 1.07
CLK3-225ENST00000569063 MKNK1Q9BUB5 465 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 TRMT61BQ9BVS5 477 aaKnown RBP21.73■■□□□ 1.07
CLK3-225ENST00000569063 IRF2BPLQ9H1B7 796 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 ATXN3LQ9H3M9 355 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 SLITRK6Q9H5Y7 841 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 VRTNQ9H8Y1 702 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 MAPK8IP1Q9UQF2 711 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 FRMD4BQ9Y2L6 1034 aa21.73■■□□□ 1.07
CLK3-225ENST00000569063 MAPK13O15264 365 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 PHACTR2O75167 634 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 HMGA1P17096 107 aaKnown RBP21.72■■□□□ 1.07
CLK3-225ENST00000569063 PSMC3P17980 439 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 RFX1P22670 979 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 CYP2F1P24903 491 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 CDC25CP30307 473 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 VIPR2P41587 438 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 RPL10AP62906 217 aaKnown RBP21.72■■□□□ 1.07
CLK3-225ENST00000569063 TNNC1P63316 161 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 MAPRE1Q15691 268 aaKnown RBP21.72■■□□□ 1.07
CLK3-225ENST00000569063 MLF2Q15773 248 aaPredicted RBP21.72■■□□□ 1.07
CLK3-225ENST00000569063 TAF12Q16514 161 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 STXBP5Q5T5C0 1151 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 TDRD10Q5VZ19 366 aaKnown RBP21.72■■□□□ 1.07
CLK3-225ENST00000569063 SPATA2LQ8IUW3 424 aaPredicted RBP21.72■■□□□ 1.07
CLK3-225ENST00000569063 DEPDC1BQ8WUY9 529 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 SYT15Q9BQS2 421 aa21.72■■□□□ 1.07
CLK3-225ENST00000569063 DDX23Q9BUQ8 820 aaKnown RBP21.72■■□□□ 1.07
CLK3-225ENST00000569063 IKBKBO14920 756 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 ATP2C2O75185 946 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 CSH1P0DML2 217 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 CSH2P0DML3 217 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 WEE1P30291 646 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 GNL1P36915 607 aaPredicted RBP21.71■■□□□ 1.07
CLK3-225ENST00000569063 GPR15P49685 360 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 DLG4P78352 724 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 FAM160A1Q05DH4 1040 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 PNOCQ13519 176 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 GRM2Q14416 872 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 CCDC142Q17RM4 750 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 ARHGAP15Q53QZ3 475 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 CEP135Q66GS9 1140 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 C4orf50Q6ZRC1 276 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 MFSD6LQ8IWD5 586 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 CCDC105Q8IYK2 499 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 DNASE1L2Q92874 299 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 MRPL45Q9BRJ2 306 aaKnown RBP21.71■■□□□ 1.07
CLK3-225ENST00000569063 SNX25Q9H3E2 840 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 TASP1Q9H6P5 420 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 CRTAC1Q9NQ79 661 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 TRPV5Q9NQA5 729 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 SIT1Q9Y3P8 196 aa21.71■■□□□ 1.07
CLK3-225ENST00000569063 MUC6Q6W4X9 2439 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 HEPACAM2A8MVW5 462 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 PDGFRBP09619 1106 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 NR2F2P24468 414 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 MAGEA11P43364 429 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 PSMC1P62191 440 aaKnown RBP21.7■■□□□ 1.06
CLK3-225ENST00000569063 BIRC3Q13489 604 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 NCOA4Q13772 614 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 DDR2Q16832 855 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 ZACNQ401N2 412 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 GPR158Q5T848 1215 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 ARID3BQ8IVW6 561 aaPredicted RBP21.7■■□□□ 1.06
CLK3-225ENST00000569063 IRF7Q92985 503 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 TIGD1Q96MW7 591 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 GCNAQ96QF7 691 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 BRD9Q9H8M2 597 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 RMND1Q9NWS8 449 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 NXF1Q9UBU9 619 aaKnown RBP21.7■■□□□ 1.06
CLK3-225ENST00000569063 ZMYM5Q9UJ78 669 aa21.7■■□□□ 1.06
CLK3-225ENST00000569063 KANSL1LA0AUZ9 987 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 VNN1O95497 513 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 F11P03951 625 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 RPL13P26373 211 aaKnown RBP21.69■■□□□ 1.06
CLK3-225ENST00000569063 HOXD11P31277 338 aaPredicted RBP21.69■■□□□ 1.06
CLK3-225ENST00000569063 NLRP12P59046 1061 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 ENPEPQ07075 957 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 ZCWPW2Q504Y3 356 aa21.69■■□□□ 1.06
CLK3-225ENST00000569063 TMEM150AQ86TG1 271 aa21.69■■□□□ 1.06
Retrieved 100 of 20,778 RNA–protein pairs in 40.6 ms