RNA–Protein interactions for RNA: ENST00000567160.1

CLN3-226, Transcript of CLN3, battenin, humanhuman

TSL 4

Gene CLN3, Length 616 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-226ENST00000567160 UBE4BO95155 1302 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 HOXD13P35453 343 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 VIPR2P41587 438 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 PRPF4BQ13523 1007 aaKnown RBP12.24□□□□□ -0.45
CLN3-226ENST00000567160 STIM1Q13586 685 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 POTEHQ6S545 545 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 LEMD2Q8NC56 503 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 ZNF461Q8TAF7 563 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 ZSCAN18Q8TBC5 510 aaPredicted RBP12.24□□□□□ -0.45
CLN3-226ENST00000567160 ZNF507Q8TCN5 953 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 HVCN1Q96D96 273 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 TCEAL4Q96EI5 215 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 GTPBP4Q9BZE4 634 aaKnown RBP12.24□□□□□ -0.45
CLN3-226ENST00000567160 GPR88Q9GZN0 384 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 FZD8Q9H461 694 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 PRMT7Q9NVM4 692 aaPredicted RBP12.24□□□□□ -0.45
CLN3-226ENST00000567160 ANO10Q9NW15 660 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 ANKFY1Q9P2R3 1169 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 EXOC7Q9UPT5 735 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 CTNND2Q9UQB3 1225 aa12.24□□□□□ -0.45
CLN3-226ENST00000567160 ADAMTS20P59510 1910 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 AKAP13Q12802 2813 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 MYBPHLA2RUH7 354 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 HEPACAM2A8MVW5 462 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 PPP1R3GB7ZBB8 358 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 TISP43B9A030 160 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 SPECC1L-ADORA2AF8WAN1 911 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 PSMA7O14818 248 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 HNRNPDLO14979 420 aaKnown RBP12.23□□□□□ -0.45
CLN3-226ENST00000567160 ATG13O75143 517 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 RHOBTB1O94844 696 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 KIF20AO95235 890 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 CTHP32929 405 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 ABCD1P33897 745 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 LIG4P49917 911 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 STX17P56962 302 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 AMHR2Q16671 573 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 TCEAL6Q6IPX3 200 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 PPP4R3CPQ6ZMV5 832 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 C11orf57Q6ZUT1 292 aaPredicted RBP12.23□□□□□ -0.45
CLN3-226ENST00000567160 CDR2LQ86X02 465 aaPredicted RBP12.23□□□□□ -0.45
CLN3-226ENST00000567160 GUF1Q8N442 669 aaKnown RBP12.23□□□□□ -0.45
CLN3-226ENST00000567160 MLKLQ8NB16 471 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 TCEAL3Q969E4 200 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 TARS2Q9BW92 718 aaKnown RBP12.23□□□□□ -0.45
CLN3-226ENST00000567160 MRPL4Q9BYD3 311 aaKnown RBP12.23□□□□□ -0.45
CLN3-226ENST00000567160 DNAJC25Q9H1X3 360 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 SLITRK6Q9H5Y7 841 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 SLC8A2Q9UPR5 921 aa12.23□□□□□ -0.45
CLN3-226ENST00000567160 EML5Q05BV3 1969 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 A0A1B0GUA9 196 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 ANKRD63C9JTQ0 380 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 TMEM189-UBE2V1I3L0A0 370 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 ACKR2O00590 384 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 B3GAT3O94766 335 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 CAVIN2O95810 425 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 TOP3BO95985 862 aaKnown RBP12.22□□□□□ -0.45
CLN3-226ENST00000567160 SCP2P22307 547 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 MATR3P43243 847 aaKnown RBP eCLIP12.22□□□□□ -0.45
CLN3-226ENST00000567160 SOX9P48436 509 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 CREB5Q02930 508 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 CCINQ13939 588 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 FAM187BQ17R55 369 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 KNOP1Q1ED39 458 aaKnown RBP12.22□□□□□ -0.45
CLN3-226ENST00000567160 BMT2Q1RMZ1 405 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 PLK5Q496M5 336 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 ANO6Q4KMQ2 910 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 COBLL1Q53SF7 1204 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 SLC8B1Q6J4K2 584 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 NELFBQ8WX92 580 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 PRIMPOLQ96LW4 560 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 ZNF512Q96ME7 567 aaPredicted RBP12.22□□□□□ -0.45
CLN3-226ENST00000567160 ZSWIM3Q96MP5 696 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 FUCA2Q9BTY2 467 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 TMEM206Q9H813 350 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 CYP4F11Q9HBI6 524 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 TMEM9BQ9NQ34 198 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 ASAH2Q9NR71 780 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 C2orf42Q9NWW7 574 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 DACH1Q9UI36 760 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 MSRB2Q9Y3D2 182 aa12.22□□□□□ -0.45
CLN3-226ENST00000567160 NUP205Q92621 2012 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 TRIM49BA6NDI0 452 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 EIF4E1BA6NMX2 242 aaKnown RBP12.21□□□□□ -0.45
CLN3-226ENST00000567160 CLIC2O15247 247 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 EXTL3O43909 919 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 ABLIM3O94929 683 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 HARSP12081 509 aaKnown RBP12.21□□□□□ -0.45
CLN3-226ENST00000567160 ATF2P15336 505 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 RDXP35241 583 aaKnown RBP12.21□□□□□ -0.45
CLN3-226ENST00000567160 PPP1R2P41236 205 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 CCR2P41597 374 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 PXNP49023 591 aaPredicted RBP12.21□□□□□ -0.45
CLN3-226ENST00000567160 ROR1Q01973 937 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 FCHO2Q0JRZ9 810 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 PAK1Q13153 545 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 PON2Q15165 354 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 ATF7IP2Q5U623 682 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 EEF1DP3Q658K8 133 aa12.21□□□□□ -0.45
CLN3-226ENST00000567160 SLC39A4Q6P5W5 647 aa12.21□□□□□ -0.45
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms