RNA–Protein interactions for RNA: ENST00000566926.1

CLK3-218, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 646 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-218ENST00000566926 TRIM49BA6NDI0 452 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 KCNJ18B7U540 433 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 SLC16A3O15427 465 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 MICAL2O94851 1124 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 STAU1O95793 577 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 KRT13P13646 458 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 PSMC2P35998 433 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 PMS1P54277 932 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 UBASH3AP57075 661 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 TNNC1P63316 161 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 CLDN10P78369 228 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 NTHL1P78549 312 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 ADAM9Q13443 819 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 BIRC3Q13489 604 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 TDGQ13569 410 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 KCNJ12Q14500 433 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 TRIM67Q6ZTA4 783 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 INTS8Q75QN2 995 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 PDZD4Q76G19 769 aaPredicted RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 FILIP1Q7Z7B0 1213 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 ITIH5Q86UX2 942 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 OR10T2Q8NGX3 314 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 MMS19Q96T76 1030 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 DUSP9Q99956 384 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 CORO1BQ9BR76 489 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 LRFN3Q9BTN0 628 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 SRRTQ9BXP5 876 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 KCNK12Q9HB15 430 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 SAMSN1Q9NSI8 373 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 HCFC1R1Q9NWW0 138 aa14.37□□□□□ -0.11
CLK3-218ENST00000566926 DDX43Q9NXZ2 648 aaKnown RBP14.37□□□□□ -0.11
CLK3-218ENST00000566926 LRRIQ3A6PVS8 624 aaPredicted RBP14.36□□□□□ -0.11
CLK3-218ENST00000566926 N4BP1O75113 896 aaKnown RBP14.36□□□□□ -0.11
CLK3-218ENST00000566926 FGF19O95750 216 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 CST3P01034 146 aaPredicted RBP14.36□□□□□ -0.11
CLK3-218ENST00000566926 ASGR2P07307 311 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 ATP1A3P13637 1013 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 CASP4P49662 377 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 VAMP7P51809 220 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 MARSP56192 900 aaKnown RBP14.36□□□□□ -0.11
CLK3-218ENST00000566926 VEPH1Q14D04 833 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 SOWAHAQ2M3V2 549 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 MTSS1LQ765P7 747 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 ATAD1Q8NBU5 361 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 ZNF516Q92618 1163 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 FGF13Q92913 245 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 TMEM209Q96SK2 561 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 RTP3Q9BQQ7 232 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 MKNK1Q9BUB5 465 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 METTL14Q9HCE5 456 aaKnown RBP14.36□□□□□ -0.11
CLK3-218ENST00000566926 ASAH2Q9NR71 780 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 GDE1Q9NZC3 331 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 PCDHB5Q9Y5E4 795 aa14.36□□□□□ -0.11
CLK3-218ENST00000566926 PTPRDP23468 1912 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 A0A1B0GTH6 734 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 TMEM221A6NGB7 291 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 M0R296 226 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 GABRDO14764 452 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 TACC1O75410 805 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 CLSTN1O94985 981 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 C4BPAP04003 597 aaKnown RBP14.35□□□□□ -0.11
CLK3-218ENST00000566926 P4HA1P13674 534 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 MAPRE1Q15691 268 aaKnown RBP14.35□□□□□ -0.11
CLK3-218ENST00000566926 WDR72Q3MJ13 1102 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 MGAT5BQ3V5L5 792 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 INTS6LQ5JSJ4 861 aaKnown RBP14.35□□□□□ -0.11
CLK3-218ENST00000566926 LIMS2Q7Z4I7 341 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 BMP8AQ7Z5Y6 402 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 FAM186BQ8IYM0 893 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 ITFG1Q8TB96 612 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 FAM84AQ96KN4 292 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 CNOT6LQ96LI5 555 aaKnown RBP14.35□□□□□ -0.11
CLK3-218ENST00000566926 SEPT5Q99719 369 aaPredicted RBP14.35□□□□□ -0.11
CLK3-218ENST00000566926 GPR88Q9GZN0 384 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 SNX25Q9H3E2 840 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 VRTNQ9H8Y1 702 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 ABCB6Q9NP58 842 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 C11orf16Q9NQ32 467 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 IFNKQ9P0W0 207 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 CEP72Q9P209 647 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 CDH9Q9ULB4 789 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 SLC27A5Q9Y2P5 690 aa14.35□□□□□ -0.11
CLK3-218ENST00000566926 FAM86C2PA6NEL3 165 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 ANHXE9PGG2 379 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 STX10O60499 249 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 VNN2O95498 520 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 EPB41P11171 864 aaKnown RBP14.34□□□□□ -0.11
CLK3-218ENST00000566926 WARSP23381 471 aaKnown RBP14.34□□□□□ -0.11
CLK3-218ENST00000566926 EPHA5P54756 1037 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 MYL6P60660 151 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 NCOA4Q13772 614 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 KRT31Q15323 416 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 TAF12Q16514 161 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 SGSM1Q2NKQ1 1148 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 ZNF699Q32M78 642 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 ZACNQ401N2 412 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 HS1BP3Q53T59 392 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 ZNF667Q5HYK9 610 aa14.34□□□□□ -0.11
CLK3-218ENST00000566926 TDRD10Q5VZ19 366 aaKnown RBP14.34□□□□□ -0.11
CLK3-218ENST00000566926 C4orf50Q6ZRC1 276 aa14.34□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 42.3 ms