RNA–Protein interactions for RNA: ENST00000566472.1

CLN3-223, Transcript of CLN3, battenin, human

TSL 4

Gene CLN3, Length 551 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum .

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RNA		Protein				Prediction (catRAPID)		Interaction (ENCODE eCLIP)
Transcript Symbol	Ensembl Transcript ID	Gene	UniProt Accession	Length	Protein Status	Prediction Score	Prediction z-Score	p-Value	Fold Change
CLN3-223	ENST00000566472	EXOC3L1	Q86VI1	746 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	ZNF410	Q86VK4	478 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	VSIG1	Q86XK7	387 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	CNPY4	Q8N129	248 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	MICALL1	Q8N3F8	863 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	ANKS4B	Q8N8V4	417 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	C1orf127	Q8N9H9	656 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	PPTC7	Q8NI37	304 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	TFAP2B	Q92481	460 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	ARHGEF2	Q92974	986 aa	Known RBP	6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	OPTN	Q96CV9	577 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	MCRS1	Q96EZ8	462 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	TMEM176A	Q96HP8	235 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	CABS1	Q96KC9	395 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	DDX23	Q9BUQ8	820 aa	Known RBP	6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	HEMGN	Q9BXL5	484 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	KDM4C	Q9H3R0	1056 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	RABEP2	Q9H5N1	569 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	PDZD7	Q9H5P4	517 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	LRRC4C	Q9HCJ2	640 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	EURL	Q9NYK6	297 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	SAMD15	Q9P1V8	674 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	SIX4	Q9UIU6	781 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	TPX2	Q9ULW0	747 aa	Known RBP	6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	WDR3	Q9UNX4	943 aa	Known RBP eCLIP	6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	ZNF148	Q9UQR1	794 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	IVNS1ABP	Q9Y6Y0	642 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	ZSWIM8	A7E2V4	1837 aa		6.59	□□□□□ -1.35
CLN3-223	ENST00000566472	ZNFX1	Q9P2E3	1918 aa	Known RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	DOCK5	Q9H7D0	1870 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	TRBV21OR9-2	A0A075B6F4	123 aa	Predicted RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	C3orf70	A6NLC5	250 aa	Predicted RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	SMIM23	A6NLE4	172 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	LACTBL1	A8MY62	500 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ZNF487	B1APH4	448 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472		F8VP50	259 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	GPR25	O00155	361 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	DPYSL4	O14531	572 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ALOX15B	O15296	676 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	B4GALT5	O43286	388 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	STRN	O43815	780 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	PEX10	O60683	326 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	LRCH4	O75427	683 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	RNF8	O76064	485 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	MICAL2	O94851	1124 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	GJB6	O95452	261 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ACSL3	O95573	720 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	NFIC	P08651	508 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	CXCL8	P10145	99 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	INSRR	P14616	1297 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ATF7	P17544	494 aa	Predicted RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	DES	P17661	470 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	GRM5	P41594	1212 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	MAGEA4	P43358	317 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	LIG3	P49916	1009 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ARSE	P51690	589 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	SNX16	P57768	344 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	PSMC1	P62191	440 aa	Known RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	RBP5	P82980	135 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	CDC42EP1	Q00587	391 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	IFT88	Q13099	833 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	TMEM132D	Q14C87	1099 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	QPCT	Q16769	361 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	LONRF1	Q17RB8	773 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	P3H1	Q32P28	736 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472		Q3C1V9	767 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ZFYVE27	Q5T4F4	411 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	UBAP2	Q5T6F2	1119 aa	Known RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	LDLRAD1	Q5T700	205 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	RNASEH2B	Q5TBB1	312 aa	Known RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	WDR78	Q5VTH9	848 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	TAPT1	Q6NXT6	567 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	VSTM1	Q6UX27	236 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	SCARA5	Q6ZMJ2	495 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ARHGEF18	Q6ZSZ5	1173 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	XYLT1	Q86Y38	959 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	SLC4A11	Q8NBS3	891 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	GPRC5A	Q8NFJ5	357 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	CMAS	Q8NFW8	434 aa	Predicted RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	CXorf38	Q8TB03	319 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	MDM1	Q8TC05	714 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	FBXO41	Q8TF61	875 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	CKAP2	Q8WWK9	683 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	USP6NL	Q92738	828 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	SGSM3	Q96HU1	749 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	CLMN	Q96JQ2	1002 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	TSPAN18	Q96SJ8	248 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	RBM15	Q96T37	977 aa	Known RBP eCLIP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ADPGK	Q9BRR6	497 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	PLEKHA5	Q9HAU0	1116 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	IFT122	Q9HBG6	1241 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	ASNSD1	Q9NWL6	643 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	NKIRAS1	Q9NYS0	192 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	RNF181	Q9P0P0	153 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	MORF4L1	Q9UBU8	362 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	SLC24A2	Q9UI40	661 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	DNPEP	Q9ULA0	475 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	BARX2	Q9UMQ3	279 aa	Predicted RBP	6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	POLI	Q9UNA4	740 aa		6.58	□□□□□ -1.36
CLN3-223	ENST00000566472	SMG5	Q9UPR3	1016 aa	Known RBP	6.58	□□□□□ -1.36

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