RNA–Protein interactions for RNA: ENST00000566078.1

CTCF-203, Transcript of CCCTC-binding factor, humanhuman

TSL 2

Gene CTCF, Length 1,627 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CTCF-203ENST00000566078 ADAM28Q9UKQ2 775 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 TSPAN16Q9UKR8 245 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 ZMYND8Q9ULU4 1186 aaPredicted RBP32.44■■■□□ 2.78
CTCF-203ENST00000566078 PTPRDP23468 1912 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 NLRC5Q86WI3 1866 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 CDH5P33151 784 aaPredicted RBP32.44■■■□□ 2.78
CTCF-203ENST00000566078 EPHB4P54760 987 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 PPP1R2P3Q6NXS1 205 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 PSRC1Q6PGN9 363 aaPredicted RBP32.44■■■□□ 2.78
CTCF-203ENST00000566078 LCLAT1Q6UWP7 414 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 ARHGEF26Q96DR7 871 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 LHX5Q9H2C1 402 aa32.44■■■□□ 2.78
CTCF-203ENST00000566078 RC3H2Q9HBD1 1191 aaKnown RBP32.44■■■□□ 2.78
CTCF-203ENST00000566078 TRAPPC3O43617 180 aa32.43■■■□□ 2.78
CTCF-203ENST00000566078 GALTP07902 379 aa32.43■■■□□ 2.78
CTCF-203ENST00000566078 TYMPP19971 482 aa32.43■■■□□ 2.78
CTCF-203ENST00000566078 PBX3P40426 434 aa32.43■■■□□ 2.78
CTCF-203ENST00000566078 ETF1P62495 437 aaKnown RBP32.43■■■□□ 2.78
CTCF-203ENST00000566078 ZNF569Q5MCW4 686 aa32.43■■■□□ 2.78
CTCF-203ENST00000566078 COL13A1Q5TAT6 717 aaPredicted RBP32.43■■■□□ 2.78
CTCF-203ENST00000566078 ZNF653Q96CK0 615 aa32.43■■■□□ 2.78
CTCF-203ENST00000566078 ZNF518BQ9C0D4 1074 aa32.43■■■□□ 2.78
CTCF-203ENST00000566078 CWH43Q9H720 699 aa32.43■■■□□ 2.78
CTCF-203ENST00000566078 BUB1O43683 1085 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 MOCS3O95396 460 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 CCDC130P13994 396 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 NAP1L1P55209 391 aaKnown RBP32.42■■■□□ 2.78
CTCF-203ENST00000566078 BCAR1P56945 870 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 ARHGAP17Q68EM7 881 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 PHF13Q86YI8 300 aaPredicted RBP32.42■■■□□ 2.78
CTCF-203ENST00000566078 MCOLN2Q8IZK6 566 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 WDTC1Q8N5D0 677 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 SYT15Q9BQS2 421 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 MYO1AQ9UBC5 1043 aa32.42■■■□□ 2.78
CTCF-203ENST00000566078 NT5C1B-RDH14C9J2C7 533 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 ATMINO43313 823 aaPredicted RBP32.41■■■□□ 2.78
CTCF-203ENST00000566078 ATP2C2O75185 946 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 GPC5P78333 572 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 TMEM240Q5SV17 173 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 OVOS1Q6IE37 1185 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 SYT10Q6XYQ8 523 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 MON1BQ7L1V2 547 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 TRIM11Q96F44 468 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 BUD13Q9BRD0 619 aaKnown RBP eCLIP32.41■■■□□ 2.78
CTCF-203ENST00000566078 C11orf70Q9BRQ4 267 aa32.41■■■□□ 2.78
CTCF-203ENST00000566078 A0A0A6YYK5 440 aaPredicted RBP32.4■■■□□ 2.78
CTCF-203ENST00000566078 TUBB4AP04350 444 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 PTPN1P18031 435 aaKnown RBP32.4■■■□□ 2.78
CTCF-203ENST00000566078 PCSK1P29120 753 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 KIAA0319Q5VV43 1072 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 MMS22LQ6ZRQ5 1243 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 RNF10Q8N5U6 811 aaKnown RBP32.4■■■□□ 2.78
CTCF-203ENST00000566078 UBA3Q8TBC4 463 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 RFFLQ8WZ73 363 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 RTP3Q9BQQ7 232 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 ADAM22Q9P0K1 906 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 GTF3C4Q9UKN8 822 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 CDH9Q9ULB4 789 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 CAPN6Q9Y6Q1 641 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 ADORA2BP29275 332 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 TKTP29401 623 aaKnown RBP32.4■■■□□ 2.78
CTCF-203ENST00000566078 CCDC142Q17RM4 750 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 MDH1BQ5I0G3 518 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 SPOUT1Q5T280 376 aaKnown RBP32.4■■■□□ 2.78
CTCF-203ENST00000566078 CMTR2Q8IYT2 770 aaKnown RBP32.4■■■□□ 2.78
CTCF-203ENST00000566078 SLC35F6Q8N357 371 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 NOX5Q96PH1 765 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 WDR24Q96S15 920 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 HESX1Q9UBX0 185 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 DNAI1Q9UI46 699 aa32.4■■■□□ 2.78
CTCF-203ENST00000566078 SF3B1O75533 1304 aaKnown RBP eCLIP32.39■■■□□ 2.783e-6■■■■■ 44.6
CTCF-203ENST00000566078 NOP2P46087 812 aaKnown RBP32.39■■■□□ 2.78
CTCF-203ENST00000566078 YWHAHQ04917 246 aaPredicted RBP32.39■■■□□ 2.78
CTCF-203ENST00000566078 BTG3Q14201 252 aaPredicted RBP32.39■■■□□ 2.78
CTCF-203ENST00000566078 C2CD6Q53TS8 623 aa32.39■■■□□ 2.78
CTCF-203ENST00000566078 ZNF592Q92610 1267 aa32.39■■■□□ 2.78
CTCF-203ENST00000566078 DPF3Q92784 378 aa32.39■■■□□ 2.78
CTCF-203ENST00000566078 YME1L1Q96TA2 773 aa32.39■■■□□ 2.78
CTCF-203ENST00000566078 CRTAC1Q9NQ79 661 aa32.39■■■□□ 2.78
CTCF-203ENST00000566078 CYTH4Q9UIA0 394 aa32.39■■■□□ 2.78
CTCF-203ENST00000566078 CCDC85CA6NKD9 419 aa32.38■■■□□ 2.77
CTCF-203ENST00000566078 MYBL1P10243 752 aa32.38■■■□□ 2.77
CTCF-203ENST00000566078 ALDH7A1P49419 539 aaKnown RBP32.38■■■□□ 2.77
CTCF-203ENST00000566078 C1QBPQ07021 282 aaKnown RBP32.38■■■□□ 2.77
CTCF-203ENST00000566078 FUT10Q6P4F1 479 aa32.38■■■□□ 2.77
CTCF-203ENST00000566078 TTC30AQ86WT1 665 aa32.38■■■□□ 2.77
CTCF-203ENST00000566078 TMEM173Q86WV6 379 aaPredicted RBP32.38■■■□□ 2.77
CTCF-203ENST00000566078 THEM5Q8N1Q8 247 aa32.38■■■□□ 2.77
CTCF-203ENST00000566078 SLC2A14Q8TDB8 520 aa32.38■■■□□ 2.77
CTCF-203ENST00000566078 CNOT8Q9UFF9 292 aaKnown RBP32.38■■■□□ 2.77
CTCF-203ENST00000566078 SYN3O14994 580 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 MMP8P22894 467 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 GPD2P43304 727 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 SLC35G2Q8TBE7 412 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 BCL7CQ8WUZ0 217 aaPredicted RBP32.37■■■□□ 2.77
CTCF-203ENST00000566078 VCPIP1Q96JH7 1222 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 ACBD6Q9BR61 282 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 GPR62Q9BZJ7 368 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 OSGEPQ9NPF4 335 aa32.37■■■□□ 2.77
CTCF-203ENST00000566078 CXXC1Q9P0U4 656 aaPredicted RBP32.37■■■□□ 2.77
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms