RNA–Protein interactions for RNA: ENST00000566057.5

CLN3-221, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 931 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-221ENST00000566057 MYBPHLA2RUH7 354 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 LRRIQ3A6PVS8 624 aaPredicted RBP19.7■□□□□ 0.74
CLN3-221ENST00000566057 CYP2F1P24903 491 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 GABRR2P28476 465 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 NUBP1P53384 320 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 MYL6P60660 151 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 DLG4P78352 724 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 CLDN10P78369 228 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 GRM2Q14416 872 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 NFE2Q16621 373 aaPredicted RBP19.7■□□□□ 0.74
CLN3-221ENST00000566057 SLC44A4Q53GD3 710 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 FAM171BQ6P995 826 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 VITQ6UXI7 678 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 STKLD1Q8NE28 680 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 CCDC47Q96A33 483 aaKnown RBP19.7■□□□□ 0.74
CLN3-221ENST00000566057 MMS19Q96T76 1030 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 MRPL45Q9BRJ2 306 aaKnown RBP19.7■□□□□ 0.74
CLN3-221ENST00000566057 XYLT2Q9H1B5 865 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 ATXN3LQ9H3M9 355 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 SLITRK6Q9H5Y7 841 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 IL21Q9HBE4 155 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 TRAF3IP3Q9Y228 551 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 NME7Q9Y5B8 376 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 COL4A2P08572 1712 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 VPS13AQ96RL7 3174 aa19.7■□□□□ 0.74
CLN3-221ENST00000566057 ZFHX2Q9C0A1 2572 aaPredicted RBP19.7■□□□□ 0.74
CLN3-221ENST00000566057 PDGFRBP09619 1106 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 HMGA1P17096 107 aaKnown RBP19.69■□□□□ 0.74
CLN3-221ENST00000566057 WARSP23381 471 aaKnown RBP19.69■□□□□ 0.74
CLN3-221ENST00000566057 PCSK1P29120 753 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 STARD6P59095 220 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 PNOCQ13519 176 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 KCNB1Q14721 858 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 VEPH1Q14D04 833 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 DDR2Q16832 855 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 WDR72Q3MJ13 1102 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 SDHAF4Q5VUM1 108 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 TDRD10Q5VZ19 366 aaKnown RBP19.69■□□□□ 0.74
CLN3-221ENST00000566057 PHLDB3Q6NSJ2 640 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 ENGASEQ8NFI3 743 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 RSPRY1Q96DX4 576 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 PHOX2BQ99453 314 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 GPR88Q9GZN0 384 aa19.69■□□□□ 0.74
CLN3-221ENST00000566057 KIF26AQ9ULI4 1882 aaPredicted RBP19.69■□□□□ 0.74
CLN3-221ENST00000566057 USP34Q70CQ2 3546 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 H0Y858 1186 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 C4BPAP04003 597 aaKnown RBP19.68■□□□□ 0.74
CLN3-221ENST00000566057 PSMC1P62191 440 aaKnown RBP19.68■□□□□ 0.74
CLN3-221ENST00000566057 PFKPQ01813 784 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 TRPC3Q13507 836 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 MLF2Q15773 248 aaPredicted RBP19.68■□□□□ 0.74
CLN3-221ENST00000566057 GPR158Q5T848 1215 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 TMEM150AQ86TG1 271 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 ELMO3Q96BJ8 720 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 SYT15Q9BQS2 421 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 FOXQ1Q9C009 403 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 ABCB6Q9NP58 842 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 CRTAC1Q9NQ79 661 aa19.68■□□□□ 0.74
CLN3-221ENST00000566057 GOLGA6L4A6NEF3 574 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 HEPACAM2A8MVW5 462 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 CALUO43852 315 aaPredicted RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 PHACTR2O75167 634 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 VNN1O95497 513 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 FGF19O95750 216 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 STAU1O95793 577 aaKnown RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 DCNP07585 359 aaKnown RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 PSMC3P17980 439 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 CD72P21854 359 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 RFX1P22670 979 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 GNL1P36915 607 aaPredicted RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 CYP4F8P98187 520 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 TAF12Q16514 161 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 C1orf220Q5T0J3 134 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 CEP135Q66GS9 1140 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 ARID3BQ8IVW6 561 aaPredicted RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 SMYD4Q8IYR2 804 aaPredicted RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 GUF1Q8N442 669 aaKnown RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 DTWD2Q8NBA8 298 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 SHDQ96IW2 340 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 DDX23Q9BUQ8 820 aaKnown RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 TRMT61BQ9BVS5 477 aaKnown RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 FAM86C1Q9NVL1 165 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 NXF1Q9UBU9 619 aaKnown RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 CDH9Q9ULB4 789 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 SIT1Q9Y3P8 196 aa19.67■□□□□ 0.74
CLN3-221ENST00000566057 MTF2Q9Y483 593 aaPredicted RBP19.67■□□□□ 0.74
CLN3-221ENST00000566057 LRRN2O75325 713 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 TACC1O75410 805 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 KIF20AO95235 890 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 F11P03951 625 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 GDI1P31150 447 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 HOXD11P31277 338 aaPredicted RBP19.66■□□□□ 0.74
CLN3-221ENST00000566057 ATICP31939 592 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 AP3M2P53677 418 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 TNNC1P63316 161 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 BIRC3Q13489 604 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 CFAP221Q4G0U5 840 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 SPATA2LQ8IUW3 424 aaPredicted RBP19.66■□□□□ 0.74
CLN3-221ENST00000566057 MFSD6LQ8IWD5 586 aa19.66■□□□□ 0.74
CLN3-221ENST00000566057 CCDC105Q8IYK2 499 aa19.66■□□□□ 0.74
Retrieved 100 of 20,778 RNA–protein pairs in 16.6 ms