RNA–Protein interactions for RNA: ENST00000565778.6

CLN3-219, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 688 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-219ENST00000565778 YAF2Q8IY57 180 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 GCNAQ96QF7 691 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 NELL2Q99435 816 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 CGRRF1Q99675 332 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 DDX23Q9BUQ8 820 aaKnown RBP22.24■■□□□ 1.15
CLN3-219ENST00000565778 DLGAP2Q9P1A6 1054 aa22.24■■□□□ 1.15
CLN3-219ENST00000565778 MYL1P05976 194 aa22.23■■□□□ 1.15
CLN3-219ENST00000565778 CYP2F1P24903 491 aa22.23■■□□□ 1.15
CLN3-219ENST00000565778 CDC25CP30307 473 aa22.23■■□□□ 1.15
CLN3-219ENST00000565778 SPATA2LQ8IUW3 424 aaPredicted RBP22.23■■□□□ 1.15
CLN3-219ENST00000565778 DNASE1L2Q92874 299 aa22.23■■□□□ 1.15
CLN3-219ENST00000565778 CCDC47Q96A33 483 aaKnown RBP22.23■■□□□ 1.15
CLN3-219ENST00000565778 BCO2Q9BYV7 579 aa22.23■■□□□ 1.15
CLN3-219ENST00000565778 TCHHQ07283 1943 aa22.23■■□□□ 1.15
CLN3-219ENST00000565778 HCRTO43612 131 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 PHACTR2O75167 634 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 RPN1P04843 607 aaKnown RBP22.22■■□□□ 1.15
CLN3-219ENST00000565778 PDGFRBP09619 1106 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 GLULP15104 373 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 GPR15P49685 360 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 RPL10AP62906 217 aaKnown RBP22.22■■□□□ 1.15
CLN3-219ENST00000565778 CYP4F8P98187 520 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 TRPC3Q13507 836 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 DDR2Q16832 855 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 SDHAF4Q5VUM1 108 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 FSIP1Q8NA03 581 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 KIAA0895Q8NCT3 520 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 ZNF516Q92618 1163 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 OSBPL6Q9BZF3 934 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 TASP1Q9H6P5 420 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 IL21Q9HBE4 155 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 LTB4R2Q9NPC1 389 aa22.22■■□□□ 1.15
CLN3-219ENST00000565778 MAGED2Q9UNF1 606 aaPredicted RBP22.22■■□□□ 1.15
CLN3-219ENST00000565778 MRPS17Q9Y2R5 130 aaKnown RBP22.22■■□□□ 1.15
CLN3-219ENST00000565778 MYBPHLA2RUH7 354 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 NCAM2O15394 837 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 ATP2C2O75185 946 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 CSH1P0DML2 217 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 CSH2P0DML3 217 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 LMO2P25791 158 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 C1orf210Q8IVY1 113 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 MKNK1Q9BUB5 465 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 SNX25Q9H3E2 840 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 GDPD2Q9HCC8 539 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 ABCB6Q9NP58 842 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 TRPV5Q9NQA5 729 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 CDH9Q9ULB4 789 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 TSC2P49815 1807 aa22.21■■□□□ 1.15
CLN3-219ENST00000565778 FAM237AA0A1B0GTK4 181 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 A0A1W2PQ27 194 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 A0A1W2PQ64 194 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 A0A1W2PQD8 194 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 MAN2B1O00754 1011 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 GFRA3O60609 400 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 NBL1P41271 181 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 WDR72Q3MJ13 1102 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 FAM171BQ6P995 826 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 LIMS2Q7Z4I7 341 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 FRMD5Q7Z6J6 570 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 SCN4BQ8IWT1 228 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 CSGALNACT1Q8TDX6 532 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 KBTBD7Q8WVZ9 684 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 RSPRY1Q96DX4 576 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 PKMYT1Q99640 499 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 SYT15Q9BQS2 421 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 SLC46A2Q9BY10 475 aa22.2■■□□□ 1.14
CLN3-219ENST00000565778 MAGEC2Q9UBF1 373 aaPredicted RBP22.2■■□□□ 1.14
CLN3-219ENST00000565778 PROB1E7EW31 1015 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 PDXKO00764 312 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 F11P03951 625 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 PRR29P0C7W0 189 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 HMGA1P17096 107 aaKnown RBP22.19■■□□□ 1.14
CLN3-219ENST00000565778 WARSP23381 471 aaKnown RBP22.19■■□□□ 1.14
CLN3-219ENST00000565778 GNL1P36915 607 aaPredicted RBP22.19■■□□□ 1.14
CLN3-219ENST00000565778 CASP4P49662 377 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 MYL6P60660 151 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 TNNC1P63316 161 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 C4orf50Q6ZRC1 276 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 STKLD1Q8NE28 680 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 OR6B3Q8NGW1 331 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 KCTD10Q9H3F6 313 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 DMAC2Q9NW81 257 aa22.19■■□□□ 1.14
CLN3-219ENST00000565778 SPATA6Q9NWH7 488 aaPredicted RBP22.19■■□□□ 1.14
CLN3-219ENST00000565778 NDRG2Q9UN36 371 aaKnown RBP22.19■■□□□ 1.14
CLN3-219ENST00000565778 NCANO14594 1321 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 CHADO15335 359 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 ZNF202O95125 648 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 KIF20AO95235 890 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 FAM163BP0C2L3 166 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 TARSP26639 723 aaKnown RBP22.18■■□□□ 1.14
CLN3-219ENST00000565778 NLRP12P59046 1061 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 PSMC1P62191 440 aaKnown RBP22.18■■□□□ 1.14
CLN3-219ENST00000565778 BIRC3Q13489 604 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 MAPRE1Q15691 268 aaKnown RBP22.18■■□□□ 1.14
CLN3-219ENST00000565778 CCDC142Q17RM4 750 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 CFAP221Q4G0U5 840 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 KRBA2Q6ZNG9 492 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 SLC9A9Q8IVB4 645 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 PARD3BQ8TEW8 1205 aa22.18■■□□□ 1.14
CLN3-219ENST00000565778 FAM3CQ92520 227 aa22.18■■□□□ 1.14
Retrieved 100 of 20,778 RNA–protein pairs in 23.3 ms