RNA–Protein interactions for RNA: ENST00000563842.5

CLK3-213, Transcript of CDC like kinase 3, humanhuman

TSL 5

Gene CLK3, Length 860 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLK3-213ENST00000563842 NXF1Q9UBU9 619 aaKnown RBP14.33□□□□□ -0.12
CLK3-213ENST00000563842 GTF3C4Q9UKN8 822 aa14.33□□□□□ -0.12
CLK3-213ENST00000563842 NUP210Q8TEM1 1887 aaPredicted RBP14.33□□□□□ -0.12
CLK3-213ENST00000563842 SLC16A3O15427 465 aaKnown RBP14.32□□□□□ -0.12
CLK3-213ENST00000563842 CSH1P0DML2 217 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 CSH2P0DML3 217 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 SRFP11831 508 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 TRIM21P19474 475 aaKnown RBP14.32□□□□□ -0.12
CLK3-213ENST00000563842 ACAT1P24752 427 aaKnown RBP14.32□□□□□ -0.12
CLK3-213ENST00000563842 CCNE1P24864 410 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 GTF2H1P32780 548 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 HTR4Q13639 388 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 SLC5A9Q2M3M2 681 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 CFAP221Q4G0U5 840 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 FAM171BQ6P995 826 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 SUGP1Q8IWZ8 645 aaKnown RBP14.32□□□□□ -0.12
CLK3-213ENST00000563842 HS6ST3Q8IZP7 471 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 TTC9BQ8N6N2 239 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 KBTBD7Q8WVZ9 684 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 GCNAQ96QF7 691 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 XYLT2Q9H1B5 865 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 DNAJC25Q9H1X3 360 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 MAGEC2Q9UBF1 373 aaPredicted RBP14.32□□□□□ -0.12
CLK3-213ENST00000563842 ZMYM5Q9UJ78 669 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 MAN1B1Q9UKM7 699 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 NUMBLQ9Y6R0 609 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 ZDBF2Q9HCK1 2354 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 MUC6Q6W4X9 2439 aa14.32□□□□□ -0.12
CLK3-213ENST00000563842 OBSL1O75147 1896 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 BICDL2A1A5D9 508 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 VNN1O95497 513 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 PDGFRBP09619 1106 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 CEBPBP17676 345 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 CDC25CP30307 473 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 PIK3CAP42336 1068 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 MAGEA11P43364 429 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 MCCD1P59942 119 aaPredicted RBP14.31□□□□□ -0.12
CLK3-213ENST00000563842 ARHGAP15Q53QZ3 475 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 ANKRD40Q6AI12 368 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 ISM2Q6H9L7 571 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 FOXR2Q6PJQ5 311 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 CLEC17AQ6ZS10 378 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 HFE2Q6ZVN8 426 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 TRIML1Q8N9V2 468 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 RSAD2Q8WXG1 361 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 TCEAL4Q96EI5 215 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 ASIC4Q96FT7 647 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 CEP295NLQ96MC4 621 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 PKMYT1Q99640 499 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 PI4K2AQ9BTU6 479 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 DNAI2Q9GZS0 605 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 TMEM8AQ9HCN3 771 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 TMLHEQ9NVH6 421 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 WNT16Q9UBV4 365 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 FBXL21Q9UKT6 434 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 ZNF318Q5VUA4 2279 aa14.31□□□□□ -0.12
CLK3-213ENST00000563842 MYBPHLA2RUH7 354 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 A8MXQ7 604 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 ECI2O75521 394 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 SOAT2O75908 522 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 HLA-DRAP01903 254 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 ATF6P18850 670 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 LMO2P25791 158 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 CCR2P41597 374 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 GCLMP48507 274 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 MORC3Q14149 939 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 KRT39Q6A163 491 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 PARM1Q6UWI2 310 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 VSTM1Q6UX27 236 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 TMC8Q8IU68 726 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 ZC3H3Q8IXZ2 948 aaKnown RBP14.3□□□□□ -0.12
CLK3-213ENST00000563842 FBXL6Q8N531 539 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 MYCBPAPQ8TBZ2 947 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 FGF14Q92915 247 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 E2F7Q96AV8 911 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 ELSPBP1Q96BH3 223 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 TNIP3Q96KP6 325 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 CEP63Q96MT8 703 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 GBP4Q96PP9 640 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 MRPL45Q9BRJ2 306 aaKnown RBP14.3□□□□□ -0.12
CLK3-213ENST00000563842 LRRC3Q9BY71 257 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 MFSD1Q9H3U5 465 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 SLITRK6Q9H5Y7 841 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 METTL14Q9HCE5 456 aaKnown RBP14.3□□□□□ -0.12
CLK3-213ENST00000563842 ZFP14Q9HCL3 533 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 KIAA1468Q9P260 1216 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 UXTQ9UBK9 157 aaPredicted RBP14.3□□□□□ -0.12
CLK3-213ENST00000563842 ANAPC1Q9H1A4 1944 aa14.3□□□□□ -0.12
CLK3-213ENST00000563842 A0A1W2PRU2 124 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 ASS1P00966 412 aaKnown RBP14.29□□□□□ -0.12
CLK3-213ENST00000563842 TRIM49P0CI25 452 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 TRIM49CP0CI26 452 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 PTPN1P18031 435 aaKnown RBP14.29□□□□□ -0.12
CLK3-213ENST00000563842 CYP2F1P24903 491 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 GABRR2P28476 465 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 PFKPQ01813 784 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 CYP27A1Q02318 531 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 TEAD2Q15562 447 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 C1orf220Q5T0J3 134 aa14.29□□□□□ -0.12
CLK3-213ENST00000563842 TCERG1LQ5VWI1 586 aa14.29□□□□□ -0.12
Retrieved 100 of 20,778 RNA–protein pairs in 50.7 ms