RNA–Protein interactions for RNA: ENST00000561797.1

VPS39-203, Transcript of VPS39, HOPS complex subunit, humanhuman

TSL 3

Gene VPS39, Length 545 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS39-203ENST00000561797 AOC1P19801 751 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 CYP2F1P24903 491 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 LMO2P25791 158 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 PCSK1P29120 753 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 VIPR2P41587 438 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 DLG4P78352 724 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 NHLH1Q02575 133 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 SNW1Q13573 536 aaKnown RBP16.78■□□□□ 0.28
VPS39-203ENST00000561797 GRM2Q14416 872 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 KCNB1Q14721 858 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 WDR72Q3MJ13 1102 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 STXBP5Q5T5C0 1151 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 SDHAF4Q5VUM1 108 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 GAREM2Q75VX8 874 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 SMARCD2Q92925 531 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 PKMYT1Q99640 499 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 SYT15Q9BQS2 421 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 GPR88Q9GZN0 384 aa16.78■□□□□ 0.28
VPS39-203ENST00000561797 COL4A2P08572 1712 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 MYBPHLA2RUH7 354 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 WARSP23381 471 aaKnown RBP16.77■□□□□ 0.28
VPS39-203ENST00000561797 PTPN5P54829 565 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 PSMC1P62191 440 aaKnown RBP16.77■□□□□ 0.28
VPS39-203ENST00000561797 TNNC1P63316 161 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 TCF15Q12870 199 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 DDR2Q16832 855 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 SLC44A4Q53GD3 710 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 GPR158Q5T848 1215 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 VITQ6UXI7 678 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 LIMS2Q7Z4I7 341 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 SPATA2LQ8IUW3 424 aaPredicted RBP16.77■□□□□ 0.28
VPS39-203ENST00000561797 ELMO3Q96BJ8 720 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 MRPL45Q9BRJ2 306 aaKnown RBP16.77■□□□□ 0.28
VPS39-203ENST00000561797 SNX25Q9H3E2 840 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 NXF1Q9UBU9 619 aaKnown RBP16.77■□□□□ 0.28
VPS39-203ENST00000561797 MAGED2Q9UNF1 606 aaPredicted RBP16.77■□□□□ 0.28
VPS39-203ENST00000561797 TRAF3IP3Q9Y228 551 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 FRMD4BQ9Y2L6 1034 aa16.77■□□□□ 0.28
VPS39-203ENST00000561797 GALR2O43603 387 aaPredicted RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 FGF19O95750 216 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 GNL1P36915 607 aaPredicted RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 CYP4F8P98187 520 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 PFKPQ01813 784 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 FAM160A1Q05DH4 1040 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 MLF2Q15773 248 aaPredicted RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 ARHGAP15Q53QZ3 475 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 TDRD10Q5VZ19 366 aaKnown RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 SCN4BQ8IWT1 228 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 SMYD4Q8IYR2 804 aaPredicted RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 GUF1Q8N442 669 aaKnown RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 ENGASEQ8NFI3 743 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 OR6B3Q8NGW1 331 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 TMEM174Q8WUU8 243 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 ERCC4Q92889 916 aaPredicted RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 SYAP1Q96A49 352 aaPredicted RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 GCNAQ96QF7 691 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 TRMT61BQ9BVS5 477 aaKnown RBP16.76■□□□□ 0.27
VPS39-203ENST00000561797 BRD9Q9H8M2 597 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 IL21Q9HBE4 155 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 CDH9Q9ULB4 789 aa16.76■□□□□ 0.27
VPS39-203ENST00000561797 HELZP42694 1942 aaKnown RBP16.75■□□□□ 0.27
VPS39-203ENST00000561797 HEPACAM2A8MVW5 462 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 H0Y858 1186 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 C4BPAP04003 597 aaKnown RBP16.75■□□□□ 0.27
VPS39-203ENST00000561797 NR2F2P24468 414 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 CDC25CP30307 473 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 GDI1P31150 447 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 ATICP31939 592 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 AP3M2P53677 418 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 RPL10AP62906 217 aaKnown RBP16.75■□□□□ 0.27
VPS39-203ENST00000561797 CLDN10P78369 228 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 CYP27A1Q02318 531 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 PHLDB3Q6NSJ2 640 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 FAM171BQ6P995 826 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 ARID3BQ8IVW6 561 aaPredicted RBP16.75■□□□□ 0.27
VPS39-203ENST00000561797 TMC2Q8TDI7 906 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 SHDQ96IW2 340 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 FOXQ1Q9C009 403 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 XYLT2Q9H1B5 865 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 ABCB6Q9NP58 842 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 CRTAC1Q9NQ79 661 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 MAGEC2Q9UBF1 373 aaPredicted RBP16.75■□□□□ 0.27
VPS39-203ENST00000561797 NME7Q9Y5B8 376 aa16.75■□□□□ 0.27
VPS39-203ENST00000561797 NCANO14594 1321 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 TACC1O75410 805 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 VNN1O95497 513 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 STAU1O95793 577 aaKnown RBP16.74■□□□□ 0.27
VPS39-203ENST00000561797 DCNP07585 359 aaKnown RBP16.74■□□□□ 0.27
VPS39-203ENST00000561797 CSH1P0DML2 217 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 CSH2P0DML3 217 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 HMGA1P17096 107 aaKnown RBP16.74■□□□□ 0.27
VPS39-203ENST00000561797 PSMC3P17980 439 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 CD72P21854 359 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 VAMP7P51809 220 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 NUBP1P53384 320 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 STARD6P59095 220 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 ADAM9Q13443 819 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 NCOA4Q13772 614 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 ZNF699Q32M78 642 aa16.74■□□□□ 0.27
VPS39-203ENST00000561797 CFAP221Q4G0U5 840 aa16.74■□□□□ 0.27
Retrieved 100 of 20,778 RNA–protein pairs in 20.1 ms