RNA–Protein interactions for RNA: ENST00000561505.2

CLN3-208, Transcript of CLN3, battenin, humanhuman

TSL 1 (best)

Gene CLN3, Length 495 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-208ENST00000561505 PCDHB5Q9Y5E4 795 aa17.72■□□□□ 0.43
CLN3-208ENST00000561505 GREB1Q4ZG55 1949 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 TADA3O75528 432 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 KRT37O76014 449 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 CSH1P0DML2 217 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 CSH2P0DML3 217 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 PNPLA4P41247 253 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 WNT7BP56706 349 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 DHX8Q14562 1220 aaKnown RBP17.71■□□□□ 0.43
CLN3-208ENST00000561505 NFE2Q16621 373 aaPredicted RBP17.71■□□□□ 0.43
CLN3-208ENST00000561505 SV2CQ496J9 727 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 LIMS2Q7Z4I7 341 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 BRAPQ7Z569 592 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 GCNAQ96QF7 691 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 ACBD6Q9BR61 282 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 SMG9Q9H0W8 520 aaKnown RBP17.71■□□□□ 0.43
CLN3-208ENST00000561505 IKZF4Q9H2S9 585 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 FBRSL1Q9HCM7 1045 aaKnown RBP17.71■□□□□ 0.43
CLN3-208ENST00000561505 GDAP2Q9NXN4 497 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 SEL1LQ9UBV2 794 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 PCDHGA5Q9Y5G8 931 aa17.71■□□□□ 0.43
CLN3-208ENST00000561505 H3BQV1 296 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 TBCAO75347 108 aaKnown RBP17.7■□□□□ 0.42
CLN3-208ENST00000561505 NOL4O94818 638 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 TCF3P15923 654 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 DRD1P21728 446 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 AVPR1AP37288 418 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 GRSF1Q12849 480 aaKnown RBP eCLIP17.7■□□□□ 0.42
CLN3-208ENST00000561505 CACNA2D4Q7Z3S7 1137 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 LRRC52Q8N7C0 313 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 MAB21L3Q8N8X9 362 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 DNAJC19Q96DA6 116 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 USP24Q9UPU5 2620 aa17.7■□□□□ 0.42
CLN3-208ENST00000561505 MAP1BP46821 2468 aaKnown RBP17.7■□□□□ 0.42
CLN3-208ENST00000561505 CNOT1A5YKK6 2376 aaKnown RBP17.69■□□□□ 0.42
CLN3-208ENST00000561505 OBSL1O75147 1896 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 RALGAPA1Q6GYQ0 2036 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 GABRDO14764 452 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 RPP40O75818 363 aaKnown RBP17.69■□□□□ 0.42
CLN3-208ENST00000561505 KRT18P05783 430 aaKnown RBP17.69■□□□□ 0.42
CLN3-208ENST00000561505 AMPD2Q01433 879 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 PDGFRLQ15198 375 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 SF3A1Q15459 793 aaKnown RBP17.69■□□□□ 0.42
CLN3-208ENST00000561505 CFAP221Q4G0U5 840 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 FBXO43Q4G163 708 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 TXNDC8Q6A555 127 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 USP49Q70CQ1 688 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 CEP68Q76N32 757 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 BRSK2Q8IWQ3 736 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 PDCL2Q8N4E4 241 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 C1orf127Q8N9H9 656 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 EZH1Q92800 747 aaPredicted RBP17.69■□□□□ 0.42
CLN3-208ENST00000561505 ZNF560Q96MR9 790 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 EBF3Q9H4W6 596 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 TMEM206Q9H813 350 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 OLFML3Q9NRN5 406 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 ABI2Q9NYB9 513 aaPredicted RBP17.69■□□□□ 0.42
CLN3-208ENST00000561505 STK17AQ9UEE5 414 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 L1RE1Q9UN81 338 aa17.69■□□□□ 0.42
CLN3-208ENST00000561505 MORC2Q9Y6X9 1032 aaPredicted RBP17.69■□□□□ 0.42
CLN3-208ENST00000561505 PMLP29590 882 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 GJA4P35212 333 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 GALK1P51570 392 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 RPL10AP62906 217 aaKnown RBP17.68■□□□□ 0.42
CLN3-208ENST00000561505 SHC2P98077 582 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 FAM160A1Q05DH4 1040 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 KCNA1Q09470 495 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 ZNF77Q15935 545 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 TAF12Q16514 161 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 LARP1BQ659C4 914 aaKnown RBP17.68■□□□□ 0.42
CLN3-208ENST00000561505 TRIM68Q6AZZ1 485 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 KBTBD6Q86V97 674 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 SFR1Q86XK3 245 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 TMEM86AQ8N2M4 240 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 KRI1Q8N9T8 703 aaKnown RBP17.68■□□□□ 0.42
CLN3-208ENST00000561505 POMGNT1Q8WZA1 660 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 MRPS31Q92665 395 aaKnown RBP17.68■□□□□ 0.42
CLN3-208ENST00000561505 ARRDC1-AS1Q9H2J1 176 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 RXFP3Q9NSD7 469 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 GCNT4Q9P109 453 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 UXTQ9UBK9 157 aaPredicted RBP17.68■□□□□ 0.42
CLN3-208ENST00000561505 EBF1Q9UH73 591 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 SPAG17Q6Q759 2223 aa17.68■□□□□ 0.42
CLN3-208ENST00000561505 FRMD3A2A2Y4 597 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 LDHAP00338 332 aaKnown RBP17.67■□□□□ 0.42
CLN3-208ENST00000561505 EGFP01133 1207 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 ARSAP15289 507 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 GAP43P17677 238 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 GARTP22102 1010 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 GPR15P49685 360 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 TSPY1Q01534 308 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 BFSP1Q12934 665 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 USP4Q13107 963 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 SF3A2Q15428 464 aaKnown RBP17.67■□□□□ 0.42
CLN3-208ENST00000561505 INTS6LQ5JSJ4 861 aaKnown RBP17.67■□□□□ 0.42
CLN3-208ENST00000561505 L1TD1Q5T7N2 865 aaKnown RBP17.67■□□□□ 0.42
CLN3-208ENST00000561505 SCARA3Q6AZY7 606 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 FAM171BQ6P995 826 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 SYT13Q7L8C5 426 aa17.67■□□□□ 0.42
CLN3-208ENST00000561505 KIAA1958Q8N8K9 716 aa17.67■□□□□ 0.42
Retrieved 100 of 20,778 RNA–protein pairs in 36.6 ms