RNA–Protein interactions for RNA: ENST00000560927.1

CRTC3-210, Transcript of CREB regulated transcription coactivator 3, humanhuman

TSL 2

Gene CRTC3, Length 2,463 nt, Biotype retained intron, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CRTC3-210ENST00000560927 HMGXB4Q9UGU5 601 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 PPME1Q9Y570 386 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 GAS2O43903 313 aaKnown RBP15.4■□□□□ 0.06
CRTC3-210ENST00000560927 SNX3O60493 162 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 DDNO94850 711 aaPredicted RBP15.4■□□□□ 0.06
CRTC3-210ENST00000560927 PSMA2P25787 234 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 GCAP28676 217 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 VCPP55072 806 aaKnown RBP15.4■□□□□ 0.06
CRTC3-210ENST00000560927 COPS2P61201 443 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 MBTD1Q05BQ5 628 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 EFCAB12Q6NXP0 572 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 EMC1Q8N766 993 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 TWNKQ96RR1 684 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 PPP1R16BQ96T49 567 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 PDGFCQ9NRA1 345 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 RBPJLQ9UBG7 517 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 CEP83Q9Y592 693 aa15.4■□□□□ 0.06
CRTC3-210ENST00000560927 GPR25O00155 361 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 LRCH4O75427 683 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 IFNB1P01574 187 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 PLCB3Q01970 1234 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 SLC25A11Q02978 314 aaKnown RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 TAP1Q03518 808 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 STAT4Q14765 748 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 R3HDM1Q15032 1099 aaKnown RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 TMED2Q15363 201 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 CAPN12Q6ZSI9 719 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 SUGP1Q8IWZ8 645 aaKnown RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 C1orf127Q8N9H9 656 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 CPXM1Q96SM3 734 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 RNPEPQ9H4A4 650 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 GGT7Q9UJ14 662 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 TPX2Q9ULW0 747 aaKnown RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 OAS1P00973 400 aaKnown RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 KRT3P12035 628 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 PTPN7P35236 360 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 RAD23BP54727 409 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 ICE2Q659A1 982 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 NUGGCQ68CJ6 796 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 CCDC62Q6P9F0 684 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 CKAP2Q8WWK9 683 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 P3H4Q92791 437 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 NKD2Q969F2 451 aaPredicted RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 NSRP1Q9H0G5 558 aaKnown RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 SMYD3Q9H7B4 428 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 ABCF3Q9NUQ8 709 aa15.39■□□□□ 0.05
CRTC3-210ENST00000560927 DDX56Q9NY93 547 aaKnown RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 DRG1Q9Y295 367 aaKnown RBP15.39■□□□□ 0.05
CRTC3-210ENST00000560927 SIGLEC16A6NMB1 481 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 SGK1O00141 431 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 BANF1O75531 89 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 CD48P09326 243 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 GHRP10912 638 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 GDF10P55107 478 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 PSMC1P62191 440 aaKnown RBP15.38■□□□□ 0.05
CRTC3-210ENST00000560927 IGBP1P78318 339 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 GAD2Q05329 585 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 RNASEH2BQ5TBB1 312 aaKnown RBP15.38■□□□□ 0.05
CRTC3-210ENST00000560927 WDR78Q5VTH9 848 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 CCHCR1Q8TD31 782 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 MAML1Q92585 1016 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 CCDC77Q9BR77 488 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 KLC4Q9NSK0 619 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 ANK1P16157 1881 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 MCM3APO60318 1980 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 DNAJC25-GNG10A0A024R161 153 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 EXOC1LA0A1B0GW35 172 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 RASA4BC9J798 803 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 GOLGA8MH3BSY2 632 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 RASA4O43374 803 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 ERBB2P04626 1255 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 ITGAVP06756 1048 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 ABHD2P08910 425 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 TXNP10599 105 aaKnown RBP15.38■□□□□ 0.05
CRTC3-210ENST00000560927 YWHAEP62258 255 aaKnown RBP15.38■□□□□ 0.05
CRTC3-210ENST00000560927 TFDP1Q14186 410 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 ZKSCAN8Q15776 578 aaPredicted RBP15.38■□□□□ 0.05
CRTC3-210ENST00000560927 CCDC142Q17RM4 750 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 TRPM8Q7Z2W7 1104 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 SLC35B2Q8TB61 432 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 BCO2Q9BYV7 579 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 FOXP3Q9BZS1 431 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 LHX5Q9H2C1 402 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 RPF1Q9H9Y2 349 aaKnown RBP15.38■□□□□ 0.05
CRTC3-210ENST00000560927 IFT122Q9HBG6 1241 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 FAM120AQ9NZB2 1118 aaKnown RBP eCLIP15.38■□□□□ 0.05
CRTC3-210ENST00000560927 STRIP2Q9ULQ0 834 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 TNFSF13BQ9Y275 285 aa15.38■□□□□ 0.05
CRTC3-210ENST00000560927 LACTBL1A8MY62 500 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 ITGB3P05106 788 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 OTUD4Q01804 1114 aaKnown RBP15.37■□□□□ 0.05
CRTC3-210ENST00000560927 KCTD2Q14681 263 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 ZNF667Q5HYK9 610 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 GJC2Q5T442 439 aaPredicted RBP15.37■□□□□ 0.05
CRTC3-210ENST00000560927 JADE1Q6IE81 842 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 XYLT1Q86Y38 959 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 SULF1Q8IWU6 871 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 ZBED8Q8IZ13 594 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 FUKQ8N0W3 1084 aa15.37■□□□□ 0.05
CRTC3-210ENST00000560927 SLC4A11Q8NBS3 891 aa15.37■□□□□ 0.05
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms