RNA–Protein interactions for RNA: ENST00000558925.1

USP3-209, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 3

Gene USP3, Length 501 nt, Biotype retained intron, Subcellular localisation Cytosol .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-209ENST00000558925 MID2Q9UJV3 735 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ITGB1BP2Q9UKP3 347 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 PNMA2Q9UL42 364 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 ZDHHC8Q9ULC8 765 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SLC39A10Q9ULF5 831 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 PADI4Q9UM07 663 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 OAZ3Q9UMX2 235 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 MAN2B2Q9Y2E5 1009 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 GPR52Q9Y2T5 361 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 SLC30A1Q9Y6M5 507 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 DGKBQ9Y6T7 804 aa1.98□□□□□ -2.09
USP3-209ENST00000558925 TBKBP1A7MCY6 615 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 H7C4K7 107 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 PYCARD-AS1I3L0S3 204 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 FOXN3O00409 490 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 ACKR2O00590 384 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 DCLK1O15075 740 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 NPHP1O15259 732 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 PJA2O43164 708 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 TEX33O43247 280 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 SH3BP5O60239 455 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 TBC1D4O60343 1298 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 CDC14BO60729 498 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 PLA2G6O60733 806 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 POMCP01189 267 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 CSTBP04080 98 aaKnown RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 ANXA2P07355 339 aaKnown RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 SNRPA1P09661 255 aaKnown RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 PIM1P11309 404 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 MYL4P12829 197 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 HK1P19367 917 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 GRK6P43250 576 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 PPM1FP49593 454 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 TOB1P50616 345 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 CHN2P52757 468 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ITGA8P53708 1063 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 CLRN1P58418 232 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 RAC3P60763 192 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 SLC25A3Q00325 362 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ICA1Q05084 483 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 BLMHQ13867 455 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 HABP2Q14520 560 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 TAF5Q15542 800 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 BMT2Q1RMZ1 405 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ZIK1Q3SY52 487 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 ZNF568Q3ZCX4 644 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ARHGAP15Q53QZ3 475 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 FKBP15Q5T1M5 1219 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ATXN7L2Q5T6C5 722 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 LIN54Q6MZP7 749 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 JMJD6Q6NYC1 403 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 TLDC1Q6P9B6 456 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 FAM111BQ6SJ93 734 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 USP49Q70CQ1 688 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 GPRIN1Q7Z2K8 1008 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 KCTD20Q7Z5Y7 419 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 USP37Q86T82 979 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ELOA2Q8IYF1 753 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 CACNA2D3Q8IZS8 1091 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 CPXCR1Q8N123 301 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ZNF527Q8NB42 609 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 GLIS1Q8NBF1 620 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 STYXQ8WUJ0 223 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 CCT6BQ92526 530 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 TFAP2CQ92754 450 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 MUL1Q969V5 352 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 SUCLG2Q96I99 432 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ZNF512Q96ME7 567 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 OR14A2Q96R54 314 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 RMDN3Q96TC7 470 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 PRRX2Q99811 253 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 GDF15Q99988 308 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 HEPHQ9BQS7 1158 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ZSWIM1Q9BR11 485 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 CPPED1Q9BRF8 314 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 SELENOOQ9BVL4 669 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 COLEC11Q9BWP8 271 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 SORBS1Q9BX66 1292 aaKnown RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 ZNF518BQ9C0D4 1074 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 MS4A7Q9GZW8 240 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 MAGEH1Q9H213 219 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 SMOC2Q9H3U7 446 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ZNF703Q9H7S9 590 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 GPR35Q9HC97 309 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 SPON1Q9HCB6 807 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 C9orf78Q9NZ63 289 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 JKAMPQ9P055 326 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 LRFN1Q9P244 771 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 CFAP97Q9P2B7 532 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 NOL12Q9UGY1 213 aaKnown RBP eCLIP1.97□□□□□ -2.09
USP3-209ENST00000558925 HDAC9Q9UKV0 1011 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 MAGED2Q9UNF1 606 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 SCAF8Q9UPN6 1271 aaKnown RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 CDYLQ9Y232 598 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 ZBTB32Q9Y2Y4 487 aaPredicted RBP1.97□□□□□ -2.09
USP3-209ENST00000558925 SH3BP1Q9Y3L3 701 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 CEP83Q9Y592 693 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 KAT6BQ8WYB5 2073 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 AATKQ6ZMQ8 1374 aa1.97□□□□□ -2.09
USP3-209ENST00000558925 MBD3L4A6NDZ8 208 aaPredicted RBP1.96□□□□□ -2.1
Retrieved 100 of 20,778 RNA–protein pairs in 39.4 ms