RNA–Protein interactions for RNA: ENST00000558827.1

SMAD3-208, Transcript of SMAD family member 3, humanhuman

TSL 4

Gene SMAD3, Length 552 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMAD3-208ENST00000558827 FAM170BA6NMN3 283 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 GLULP15104 373 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 HOXD11P31277 338 aaPredicted RBP13.42□□□□□ -0.26
SMAD3-208ENST00000558827 DLG4P78352 724 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 BIRC3Q13489 604 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 TRPC3Q13507 836 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 ITIH5Q86UX2 942 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 ARID3BQ8IVW6 561 aaPredicted RBP13.42□□□□□ -0.26
SMAD3-208ENST00000558827 SMYD4Q8IYR2 804 aaPredicted RBP13.42□□□□□ -0.26
SMAD3-208ENST00000558827 TMEM86AQ8N2M4 240 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 TOP6BLQ8N6T0 577 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 OR6B3Q8NGW1 331 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 SPPL2BQ8TCT7 592 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 KBTBD7Q8WVZ9 684 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 ZFYVE19Q96K21 471 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 LRRC3BQ96PB8 259 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 PRRX2Q99811 253 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 SYT15Q9BQS2 421 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 ACBD6Q9BR61 282 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 TRMT61BQ9BVS5 477 aaKnown RBP13.42□□□□□ -0.26
SMAD3-208ENST00000558827 KCTD10Q9H3F6 313 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 IL21Q9HBE4 155 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 USP25Q9UHP3 1055 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 NDRG2Q9UN36 371 aaKnown RBP13.42□□□□□ -0.26
SMAD3-208ENST00000558827 NME7Q9Y5B8 376 aa13.42□□□□□ -0.26
SMAD3-208ENST00000558827 A0A1W2PQ27 194 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 A0A1W2PQ64 194 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 A0A1W2PQD8 194 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 LRRIQ3A6PVS8 624 aaPredicted RBP13.41□□□□□ -0.26
SMAD3-208ENST00000558827 NR3C1P04150 777 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 RAP1GAPP47736 663 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 LHX1P48742 406 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 CDH8P55286 799 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 DPYDQ12882 1025 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 PSMD2Q13200 908 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 PNOCQ13519 176 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 ANGPT1Q15389 498 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 WDR72Q3MJ13 1102 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 SCARA5Q6ZMJ2 495 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 SPATA2LQ8IUW3 424 aaPredicted RBP13.41□□□□□ -0.26
SMAD3-208ENST00000558827 YAF2Q8IY57 180 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 CCDC105Q8IYK2 499 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 LEMD2Q8NC56 503 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 EEF2KMTQ96G04 330 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 PKMYT1Q99640 499 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 MKNK1Q9BUB5 465 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 SNX25Q9H3E2 840 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 MMRN2Q9H8L6 949 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 CRTAC1Q9NQ79 661 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 ASB3Q9Y575 518 aa13.41□□□□□ -0.26
SMAD3-208ENST00000558827 PTPRZ1P23471 2315 aaPredicted RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 FAM237AA0A1B0GTK4 181 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 KANSL1LA0AUZ9 987 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 SLC38A8A6NNN8 435 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 DPYSL4O14531 572 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 GABRDO14764 452 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 ZNF263O14978 683 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 MICAL2O94851 1124 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 PRAMEF12O95522 483 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 HMGA1P17096 107 aaKnown RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 PSMC3P17980 439 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 BDNFP23560 247 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 TARSP26639 723 aaKnown RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 GNL1P36915 607 aaPredicted RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 SOX9P48436 509 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 STARD6P59095 220 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 SNRPFP62306 86 aaKnown RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 TNNC1P63316 161 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 PFKPQ01813 784 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 CYP27A1Q02318 531 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 NFE2Q16621 373 aaPredicted RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 ARHGAP15Q53QZ3 475 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 MDH1BQ5I0G3 518 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 TDRD10Q5VZ19 366 aaKnown RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 TXNDC8Q6A555 127 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 PHLDB3Q6NSJ2 640 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 FRMD5Q7Z6J6 570 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 C12orf56Q8IXR9 622 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 MAB21L3Q8N8X9 362 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 PJA1Q8NG27 643 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 C2orf15Q8WU43 125 aaKnown RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 MYLPFQ96A32 169 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 CCDC47Q96A33 483 aaKnown RBP13.4□□□□□ -0.26
SMAD3-208ENST00000558827 SHDQ96IW2 340 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 GCNAQ96QF7 691 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 SLC46A2Q9BY10 475 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 DPEP3Q9H4B8 488 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 SMYD3Q9H7B4 428 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 DMAC2Q9NW81 257 aa13.4□□□□□ -0.26
SMAD3-208ENST00000558827 ZNF638Q14966 1978 aaKnown RBP13.4□□□□□ -0.27
SMAD3-208ENST00000558827 TICRRQ7Z2Z1 1910 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 GOLGA6L4A6NEF3 574 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 CLDN5O00501 218 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 VNN1O95497 513 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 F11P03951 625 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 WARSP23381 471 aaKnown RBP13.39□□□□□ -0.27
SMAD3-208ENST00000558827 PCSK1P29120 753 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 NLRP12P59046 1061 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 ORC1Q13415 861 aa13.39□□□□□ -0.27
SMAD3-208ENST00000558827 ISM2Q6H9L7 571 aa13.39□□□□□ -0.27
Retrieved 100 of 20,778 RNA–protein pairs in 83.8 ms