RNA–Protein interactions for RNA: ENST00000555774.5

SHMT2-222, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 1 (best)

Gene SHMT2, Length 2,311 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-222ENST00000555774 ASPAP45381 313 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 SF3A3Q12874 501 aaKnown RBP eCLIP14.2□□□□□ -0.146e-8■■□□□ 12.4
SHMT2-222ENST00000555774 MAPK6Q16659 721 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 WDR72Q3MJ13 1102 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 SEZ6Q53EL9 994 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 METTL7BQ6UX53 244 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 RIOX2Q8IUF8 465 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 FBF1Q8TES7 1133 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 VPS37BQ9H9H4 285 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 ARHGEF3Q9NR81 526 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 MCM8Q9UJA3 840 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 DYNC1LI1Q9Y6G9 523 aaKnown RBP14.2□□□□□ -0.14
SHMT2-222ENST00000555774 SGK1O00141 431 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 B4GALT4O60513 344 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 TNNC2P02585 160 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 PSMA2P25787 234 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 CNTN2Q02246 1040 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 SLC25A11Q02978 314 aaKnown RBP14.2□□□□□ -0.14
SHMT2-222ENST00000555774 EFHC2Q5JST6 749 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 BBS12Q6ZW61 710 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 ASRGL1Q7L266 308 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 ZBTB33Q86T24 672 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 PPIL6Q8IXY8 311 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 FITM2Q8N6M3 262 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 KLHL29Q96CT2 875 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 ANKRD36BP1Q96IX9 119 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 MYCBPQ99417 103 aaPredicted RBP14.2□□□□□ -0.14
SHMT2-222ENST00000555774 BAIAP2L1Q9UHR4 511 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 AGTPBP1Q9UPW5 1226 aa14.2□□□□□ -0.14
SHMT2-222ENST00000555774 FZD9O00144 591 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 HOXC6P09630 235 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 ETS1P14921 441 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 KRT15P19012 456 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 PROZP22891 400 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 ARL4CP56559 192 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 PDK4Q16654 411 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 HIF1AQ16665 826 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 MPZL3Q6UWV2 235 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 LBX2Q6XYB7 198 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 TSHZ1Q6ZSZ6 1077 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 PNMA8AQ86V59 439 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-222ENST00000555774 CEP57Q86XR8 500 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 ZBED8Q8IZ13 594 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 ATP11CQ8NB49 1132 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 TFAP2BQ92481 460 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 XYLT2Q9H1B5 865 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 TXLNGQ9NUQ3 528 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 GEMIN8Q9NWZ8 242 aaKnown RBP14.19□□□□□ -0.14
SHMT2-222ENST00000555774 IGKV6-21A0A0C4DH24 114 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 POC1B-GALNT4F8VUJ3 575 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 IGF2BP3O00425 579 aaKnown RBP eCLIP14.19□□□□□ -0.14
SHMT2-222ENST00000555774 KRT3P12035 628 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 NF2P35240 595 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 TCF7P36402 384 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-222ENST00000555774 GEMIN4P57678 1058 aaKnown RBP14.19□□□□□ -0.14
SHMT2-222ENST00000555774 LACTBP83111 547 aaPredicted RBP14.19□□□□□ -0.14
SHMT2-222ENST00000555774 PLCB3Q01970 1234 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 LAMTOR4Q0VGL1 99 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 FSTL1Q12841 308 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 PDIA2Q13087 525 aaKnown RBP14.19□□□□□ -0.14
SHMT2-222ENST00000555774 ACAP1Q15027 740 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 SETDB1Q15047 1291 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 KLHL38Q2WGJ6 581 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 SPDYAQ5MJ70 313 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 ANGEL2Q5VTE6 544 aaKnown RBP14.19□□□□□ -0.14
SHMT2-222ENST00000555774 TXNRD3NBQ6F5E7 133 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 RMDN2Q96LZ7 410 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 SNCAIPQ9Y6H5 919 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 USH1CQ9Y6N9 552 aa14.19□□□□□ -0.14
SHMT2-222ENST00000555774 TTLL13PA6NNM8 815 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 E7ESA3 106 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 ZWINTO95229 277 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 IL18RAPO95256 599 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 WEE2P0C1S8 567 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 YARSP54577 528 aaKnown RBP14.18□□□□□ -0.14
SHMT2-222ENST00000555774 KCNJ2P63252 427 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 FASTKD3Q14CZ7 662 aaKnown RBP14.18□□□□□ -0.14
SHMT2-222ENST00000555774 PKN2Q16513 984 aaKnown RBP14.18□□□□□ -0.14
SHMT2-222ENST00000555774 ECHDC2Q86YB7 292 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 TMEM121Q9BTD3 319 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 ZMYND8Q9ULU4 1186 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-222ENST00000555774 GJA3Q9Y6H8 435 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 A0A0G2JMZ2 1700 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 TYROBPO43914 113 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 LGR5O75473 907 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 UNC5CO95185 931 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 TFAMQ00059 246 aaKnown RBP14.18□□□□□ -0.14
SHMT2-222ENST00000555774 MGAT5Q09328 741 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 TFDP1Q14186 410 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 PTPN20Q4JDL3 420 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 ZNF394Q53GI3 561 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 CYP4A22Q5TCH4 519 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 SCARA3Q6AZY7 606 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 DENND1BQ6P3S1 775 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 GIMAP7Q8NHV1 300 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 LRRC8CQ8TDW0 803 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 RAB3IPQ96QF0 476 aaPredicted RBP14.18□□□□□ -0.14
SHMT2-222ENST00000555774 MPHOSPH6Q99547 160 aaKnown RBP14.18□□□□□ -0.14
SHMT2-222ENST00000555774 PTPRHQ9HD43 1115 aa14.18□□□□□ -0.14
SHMT2-222ENST00000555774 PHTF1Q9UMS5 762 aa14.18□□□□□ -0.14
Retrieved 100 of 20,778 RNA–protein pairs in 31.2 ms