RNA–Protein interactions for RNA: ENST00000555213.1

SHMT2-218, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 611 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-218ENST00000555213 COG5Q9UP83 839 aa11.64□□□□□ -0.55
SHMT2-218ENST00000555213 LUC7L2Q9Y383 392 aaKnown RBP11.64□□□□□ -0.55
SHMT2-218ENST00000555213 TSC2P49815 1807 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 A8MXQ7 604 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 GABRDO14764 452 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 TGM5O43548 720 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 TBC1D4O60343 1298 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 GNL1P36915 607 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-218ENST00000555213 CUL2Q13617 745 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 COL19A1Q14993 1142 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 NFE2Q16621 373 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-218ENST00000555213 MEA1Q16626 185 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 SPOPLQ6IQ16 392 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 TRIM65Q6PJ69 517 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 RAD9BQ6WBX8 426 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 LIMS2Q7Z4I7 341 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 C17orf53Q8N3J3 647 aaPredicted RBP11.63□□□□□ -0.55
SHMT2-218ENST00000555213 OR10T2Q8NGX3 314 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 ZNF461Q8TAF7 563 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 C2orf15Q8WU43 125 aaKnown RBP11.63□□□□□ -0.55
SHMT2-218ENST00000555213 HDAC7Q8WUI4 952 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 KBTBD7Q8WVZ9 684 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 HLA-CQ95604 372 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 TNIP3Q96KP6 325 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 SYT15Q9BQS2 421 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 MRPL45Q9BRJ2 306 aaKnown RBP11.63□□□□□ -0.55
SHMT2-218ENST00000555213 BCO2Q9BYV7 579 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 GPR88Q9GZN0 384 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 ZCWPW1Q9H0M4 648 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 PLEKHA4Q9H4M7 779 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 SFXN1Q9H9B4 322 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 APOBEC3GQ9HC16 384 aaKnown RBP11.63□□□□□ -0.55
SHMT2-218ENST00000555213 MAN1C1Q9NR34 630 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 AFF4Q9UHB7 1163 aaKnown RBP11.63□□□□□ -0.55
SHMT2-218ENST00000555213 CDH9Q9ULB4 789 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 SCN1AP35498 2009 aa11.63□□□□□ -0.55
SHMT2-218ENST00000555213 UNC80Q8N2C7 3258 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 VWA8A3KMH1 1905 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 WDR27A2RRH5 827 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 ESPNB1AK53 854 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 PRRG1O14668 218 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 ADAM12O43184 909 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 UCHL3P15374 230 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 EPCAMP16422 314 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 HOXB8P17481 243 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 CD58P19256 250 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 ACAT1P24752 427 aaKnown RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 GTF2F1P35269 517 aaKnown RBP eCLIP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 RAP1GAPP47736 663 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 JAM2P57087 298 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 POLR2FP61218 127 aaKnown RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 INCA1Q0VD86 236 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 GPR17Q13304 367 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 PLD1Q13393 1074 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 ADAM15Q13444 863 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 MTF1Q14872 753 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 SLC39A12Q504Y0 691 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 INTS6LQ5JSJ4 861 aaKnown RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 HGSNATQ68CP4 663 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 IQCEQ6IPM2 695 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 RSPO2Q6UXX9 243 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 TMEM184AQ6ZMB5 413 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 C4orf50Q6ZRC1 276 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 RTL10Q7L3V2 364 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 ENOSF1Q7L5Y1 443 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 IRF2BP2Q7Z5L9 587 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 UNC93AQ86WB7 457 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 CNGA4Q8IV77 575 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 PPM1KQ8N3J5 372 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 KREMEN2Q8NCW0 462 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 NEK11Q8NG66 645 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 SLC22A17Q8WUG5 538 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 TATDN2Q93075 761 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 IQCDQ96DY2 449 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 PCMTD1Q96MG8 357 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 BAG1Q99933 345 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 UBE2ZQ9H832 354 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 KCND1Q9NSA2 647 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 CEP72Q9P209 647 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 FBXW11Q9UKB1 542 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 BARX2Q9UMQ3 279 aaPredicted RBP11.62□□□□□ -0.55
SHMT2-218ENST00000555213 FHOD1Q9Y613 1164 aa11.62□□□□□ -0.55
SHMT2-218ENST00000555213 ATP8B3O60423 1300 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 ATG2AQ2TAZ0 1938 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 LINC01565O15544 149 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 ABLIM3O94929 683 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 GLP2RO95838 553 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 C8AP07357 584 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 WEE2P0C1S8 567 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 OR4Q2P0C623 313 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 ATF2P15336 505 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 KCNA5P22460 613 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 RFX1P22670 979 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 PSMC1P62191 440 aaKnown RBP11.61□□□□□ -0.55
SHMT2-218ENST00000555213 CDK17Q00537 523 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 GCNT1Q02742 428 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 ADCY1Q08828 1119 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 AAK1Q2M2I8 961 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 CTC1Q2NKJ3 1217 aa11.61□□□□□ -0.55
SHMT2-218ENST00000555213 PPM1LQ5SGD2 360 aa11.61□□□□□ -0.55
Retrieved 100 of 20,778 RNA–protein pairs in 28 ms