RNA–Protein interactions for RNA: ENST00000552783.5

LIMA1-214, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,612 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-214ENST00000552783 UVRAGQ9P2Y5 699 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 SLC7A8Q9UHI5 535 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CCPG1Q9ULG6 757 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CYB561D2O14569 222 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 DNALI1O14645 258 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 SLC16A4O15374 487 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 MAP3K7O43318 606 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 BUD23O43709 281 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 LIASO43766 372 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 PGM3O95394 542 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 FOSP01100 380 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 ESRRAP11474 423 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 ATF7P17544 494 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 ARFIP2P53365 341 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 SPP2Q13103 211 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 MSLNQ13421 630 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 RASA2Q15283 850 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CCNG2Q16589 344 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 LIN52Q52LA3 116 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 RNASEH2BQ5TBB1 312 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CC2D2BQ6DHV5 1058 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 APOBEC3HQ6NTF7 200 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 MFSD7Q6UXD7 560 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CCDC89Q8N998 374 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 BANPQ8N9N5 519 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 GSTCDQ8NEC7 633 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 JDP2Q8WYK2 163 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 TTC17Q96AE7 1141 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 NMD3Q96D46 503 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 PRMT6Q96LA8 375 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CFAP57Q96MR6 1250 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 FNBP1Q96RU3 617 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 PAFAH2Q99487 392 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CCDC77Q9BR77 488 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 C11orf70Q9BRQ4 267 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 THTPAQ9BU02 230 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 DDX43Q9NXZ2 648 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 PRR12Q9ULL5 1215 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 PLA2G4CQ9UP65 541 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 ZNF148Q9UQR1 794 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 TBC1D30Q9Y2I9 924 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 RBBP6Q7Z6E9 1792 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CCDC195A0A1B0GUA6 201 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CAPN14A8MX76 684 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 TBX3O15119 743 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 HNRNPRO43390 633 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 ABHD2P08910 425 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CIITAP33076 1130 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 HIRAP54198 1017 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 USP46P62068 366 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 CDK16Q00536 496 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 PDE1BQ01064 536 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 ZBTB16Q05516 673 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 ZNF252P-AS1Q0IIN9 211 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 DLG1Q12959 904 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 PEX6Q13608 980 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 XKR9Q5GH70 373 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 WDR78Q5VTH9 848 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 MOXD1Q6UVY6 613 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 TDRPQ86YL5 185 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 SLC9A9Q8IVB4 645 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 MORC4Q8TE76 937 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 DCAKDQ8WVC6 231 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 NCSTNQ92542 709 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 ECSITQ9BQ95 431 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 TRIM56Q9BRZ2 755 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 TSSK1BQ9BXA7 367 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 SHCBP1LQ9BZQ2 653 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 DMAP1Q9NPF5 467 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 GALNT8Q9NY28 637 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 LARSQ9P2J5 1176 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 TRPC5Q9UL62 973 aaPredicted RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 SMG5Q9UPR3 1016 aaKnown RBP5.1□□□□□ -1.59
LIMA1-214ENST00000552783 IVNS1ABPQ9Y6Y0 642 aa5.1□□□□□ -1.59
LIMA1-214ENST00000552783 F8VP50 259 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 IPO5O00410 1097 aaKnown RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ALOX15BO15296 676 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 AVILO75366 819 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 LMNAP02545 664 aaKnown RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 GSTA2P09210 222 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ETV4P43268 484 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 NT5C2P49902 561 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PEX3P56589 373 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 BPIFB4P59827 614 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 DYNLT1P63172 113 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 AP3B2Q13367 1082 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 UBAP2LQ14157 1087 aaKnown RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 GK3PQ14409 553 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PRKD1Q15139 912 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 LRRC23Q53EV4 343 aaPredicted RBP5.09□□□□□ -1.59
LIMA1-214ENST00000552783 RALGPS1Q5JS13 557 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 CFAP157Q5JU67 520 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 FBXL19Q6PCT2 694 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PADI6Q6TGC4 694 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ATG14Q6ZNE5 492 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 C3orf62Q6ZUJ4 267 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 PODNQ7Z5L7 613 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 ULK2Q8IYT8 1036 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 GRK7Q8WTQ7 553 aa5.09□□□□□ -1.59
LIMA1-214ENST00000552783 CHURC1Q8WUH1 139 aa5.09□□□□□ -1.59
Retrieved 100 of 20,778 RNA–protein pairs in 31.6 ms