RNA–Protein interactions for RNA: ENST00000546744.5

PTCH1-212, Transcript of patched 1, humanhuman

TSL 2

Gene PTCH1, Length 4,389 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
PTCH1-212ENST00000546744 TRIM24O15164 1050 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 SORBS3O60504 671 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 EFCAB14O75071 495 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 CDK16Q00536 496 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 ZC3H12BQ5HYM0 836 aaKnown RBP13.33□□□□□ -0.28
PTCH1-212ENST00000546744 FOXR2Q6PJQ5 311 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 BEST2Q8NFU1 509 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 STN1Q9H668 368 aaKnown RBP13.33□□□□□ -0.28
PTCH1-212ENST00000546744 MARCOQ9UEW3 520 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-212ENST00000546744 USP17L3A6NCW0 530 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 USP17L4A6NCW7 530 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 TCP10Q12799 353 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 RGS21Q2M5E4 152 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 POTEGQ6S5H5 508 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 USP17L1Q7RTZ2 530 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 ZNF554Q86TJ5 538 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 NCAPG2Q86XI2 1143 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 FAM9CQ8IZT9 166 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 KYQ8NBH2 561 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 ULK4Q96C45 1275 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 GJD4Q96KN9 370 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-212ENST00000546744 FAM111AQ96PZ2 611 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 APOL4Q9BPW4 351 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 TMEM245Q9H330 911 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 GPBP1L1Q9HC44 474 aaPredicted RBP13.33□□□□□ -0.28
PTCH1-212ENST00000546744 TRPC7Q9HCX4 862 aa13.33□□□□□ -0.28
PTCH1-212ENST00000546744 TYW5A2RUC4 315 aaKnown RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 FAM25AB3EWG3 89 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 FAM25CB3EWG5 89 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 FAM25GB3EWG6 89 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 BBOX1O75936 387 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 MED26O95402 600 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 FDX1P10109 184 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 RBP3P10745 1247 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 SLC9A1P19634 815 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 PTDSS1P48651 473 aaKnown RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 TUBA4AP68366 448 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 EZH2Q15910 746 aaKnown RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 EFHC2Q5JST6 749 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 KCTD1Q719H9 257 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 HAUS6Q7Z4H7 955 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 IQCKQ8N0W5 287 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 EXD1Q8NHP7 514 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 POP5Q969H6 163 aaKnown RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 NDNQ99608 321 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 DAPK2Q9UIK4 370 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 NAALADL1Q9UQQ1 740 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 PHRF1Q9P1Y6 1649 aaKnown RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 SPDYE16A6NNV3 312 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 FCHO1O14526 889 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 APRTP07741 180 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 NFX1Q12986 1120 aaKnown RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 SPDYE2Q495Y8 402 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 PALB2Q86YC2 1186 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 SVOPQ8N4V2 548 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 CCDC33Q8N5R6 958 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 MAB21L3Q8N8X9 362 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 OTUB1Q96FW1 271 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 OLFM1Q99784 485 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 LMO7Q8WWI1 1683 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 RGPD5Q99666 1765 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 ROBO1Q9Y6N7 1651 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 CD44P16070 742 aaKnown RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 KCNJ1P48048 391 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 CPA2P48052 419 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 POU5F1BQ06416 359 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 MDH1BQ5I0G3 518 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 ACAD10Q6JQN1 1059 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 METTL23Q86XA0 190 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 THNSL1Q8IYQ7 743 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 GDPD5Q8WTR4 605 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 OSCP1Q8WVF1 389 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 ISCA1Q9BUE6 129 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 TMEM8AQ9HCN3 771 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 DENND3A2RUS2 1198 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 CFAP99D6REC4 459 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 TIMM44O43615 452 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 CCDC166P0CW27 439 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 FDFT1P37268 417 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 GSCP56915 257 aaPredicted RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 ZBTB41Q5SVQ8 909 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 TSEN2Q8NCE0 465 aaKnown RBP13.32□□□□□ -0.28
PTCH1-212ENST00000546744 AK5Q9Y6K8 562 aa13.32□□□□□ -0.28
PTCH1-212ENST00000546744 TOMM70O94826 608 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 ABHD2P08910 425 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 RPA1P27694 616 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 COPB2P35606 906 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 PSMC5P62195 406 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 MAPK6Q16659 721 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 DUOXA2Q1HG44 320 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 FNIP1Q8TF40 1166 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 ATP8B4Q8TF62 1192 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 EZH1Q92800 747 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-212ENST00000546744 OXNAD1Q96HP4 312 aaPredicted RBP13.31□□□□□ -0.28
PTCH1-212ENST00000546744 COQ7Q99807 217 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 EIF2AK1Q9BQI3 630 aaKnown RBP13.31□□□□□ -0.28
PTCH1-212ENST00000546744 SEMA4AQ9H3S1 761 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 GOLPH3Q9H4A6 298 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 ZNF556Q9HAH1 456 aa13.31□□□□□ -0.28
PTCH1-212ENST00000546744 LOC100653049A0A140TA62 436 aa13.31□□□□□ -0.28
Retrieved 100 of 20,778 RNA–protein pairs in 35.5 ms