RNA–Protein interactions for RNA: ENST00000546411.6

CUX1-211, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,212 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-211ENST00000546411 VCXQ9H320 206 aa16.42■□□□□ 0.22
CUX1-211ENST00000546411 VCX3BQ9H321 246 aa16.42■□□□□ 0.22
CUX1-211ENST00000546411 COG5Q9UP83 839 aa16.42■□□□□ 0.22
CUX1-211ENST00000546411 IGF2BP3O00425 579 aaKnown RBP eCLIP16.41■□□□□ 0.22
CUX1-211ENST00000546411 ADCY3O60266 1144 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 UBA1P22314 1058 aaKnown RBP16.41■□□□□ 0.22
CUX1-211ENST00000546411 SIAH1Q8IUQ4 282 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 AFAP1L2Q8N4X5 818 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 BSNDQ8WZ55 320 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 PFDN4Q9NQP4 134 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 PIH1D1Q9NWS0 290 aaKnown RBP16.41■□□□□ 0.22
CUX1-211ENST00000546411 DUOX1Q9NRD9 1551 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 PECAM1P16284 738 aaPredicted RBP16.41■□□□□ 0.22
CUX1-211ENST00000546411 EFHC2Q5JST6 749 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 FKBP1CQ5VVH2 108 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 TDRD10Q5VZ19 366 aaKnown RBP16.41■□□□□ 0.22
CUX1-211ENST00000546411 RNF135Q8IUD6 432 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 C2orf69Q8N8R5 385 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 HDAC11Q96DB2 347 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 RBAK-RBAKDNI3L0D1 243 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 ALDH5A1P51649 535 aaPredicted RBP16.41■□□□□ 0.22
CUX1-211ENST00000546411 CCNG2Q16589 344 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 EXD1Q8NHP7 514 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 FAM111AQ96PZ2 611 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 NUDCD1Q96RS6 583 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 TSSK1BQ9BXA7 367 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 FAM129AQ9BZQ8 928 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 RSAD1Q9HA92 442 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 DPP3Q9NY33 737 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 WHRNQ9P202 907 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 MRPL42Q9Y6G3 142 aaKnown RBP16.41■□□□□ 0.22
CUX1-211ENST00000546411 MYH10P35580 1976 aa16.41■□□□□ 0.22
CUX1-211ENST00000546411 AGPSO00116 658 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 SLC25A27O95847 323 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 SULT1E1P49888 294 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 PTPN11Q06124 597 aaPredicted RBP16.4■□□□□ 0.22
CUX1-211ENST00000546411 POU5F1BQ06416 359 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 PAN2Q504Q3 1202 aaKnown RBP16.4■□□□□ 0.22
CUX1-211ENST00000546411 CCDC117Q8IWD4 279 aaPredicted RBP16.4■□□□□ 0.22
CUX1-211ENST00000546411 BFARQ9NZS9 450 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 CCL15-CCL14A0A0B4J2E2 113 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 MAGEB2O15479 319 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 CYP2C8P10632 490 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 TARSP26639 723 aaKnown RBP16.4■□□□□ 0.22
CUX1-211ENST00000546411 CCL15Q16663 113 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 SLC9A9Q8IVB4 645 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 CDKL3Q8IVW4 592 aaPredicted RBP16.4■□□□□ 0.22
CUX1-211ENST00000546411 LRRN4Q8WUT4 740 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 RXFP2Q8WXD0 754 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 CEP41Q9BYV8 373 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 CCDC68Q9H2F9 335 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 SENP1Q9P0U3 644 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 DCDC2CA8MYV0 355 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 TRIM49D1C9J1S8 452 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 UBOX5O94941 541 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 SPIRE1Q08AE8 756 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 FAM131BQ86XD5 332 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 PPIL6Q8IXY8 311 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 APPL2Q8NEU8 664 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 GPRC5AQ8NFJ5 357 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 SMG5Q9UPR3 1016 aaKnown RBP16.4■□□□□ 0.22
CUX1-211ENST00000546411 SCTRP47872 440 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 SNAPC2Q13487 334 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 ZBTB10Q96DT7 871 aa16.4■□□□□ 0.22
CUX1-211ENST00000546411 CES2O00748 559 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 IL18RAPO95256 599 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 RAD23BP54727 409 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 ALDH18A1P54886 795 aaKnown RBP16.39■□□□□ 0.21
CUX1-211ENST00000546411 DLK2Q6UY11 383 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 NDUFAF2Q8N183 169 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 SHCBP1LQ9BZQ2 653 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 USP18Q9UMW8 372 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 APOBEC2Q9Y235 224 aaKnown RBP16.39■□□□□ 0.21
CUX1-211ENST00000546411 FOXO6A8MYZ6 492 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 ASAP2O43150 1006 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 ENO1P06733 434 aaKnown RBP16.39■□□□□ 0.21
CUX1-211ENST00000546411 SH2D4BQ5SQS7 431 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 ZBTB41Q5SVQ8 909 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 CYB5D1Q6P9G0 228 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 PACS2Q86VP3 889 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 MYLK4Q86YV6 388 aaPredicted RBP16.39■□□□□ 0.21
CUX1-211ENST00000546411 TNIP3Q96KP6 325 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 IRF6O14896 467 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 LCA5LO95447 670 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 VGLL4Q14135 290 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 WDR49Q8IV35 697 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 DAW1Q8N136 415 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 GBP5Q96PP8 586 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 OSMRQ99650 979 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 USH1CQ9Y6N9 552 aa16.39■□□□□ 0.21
CUX1-211ENST00000546411 SPDYE16A6NNV3 312 aaPredicted RBP16.38■□□□□ 0.21
CUX1-211ENST00000546411 ZNF862O60290 1169 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 PPFIA2O75334 1257 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 EGFRP00533 1210 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 TPD52P55327 224 aaPredicted RBP16.38■□□□□ 0.21
CUX1-211ENST00000546411 RASIP1Q5U651 963 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 ERO1BQ86YB8 467 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 ARMC2Q8NEN0 867 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 SETD4Q9NVD3 440 aa16.38■□□□□ 0.21
CUX1-211ENST00000546411 ASTE1Q2TB18 679 aaPredicted RBP16.38■□□□□ 0.21
Retrieved 100 of 20,778 RNA–protein pairs in 20.9 ms