RNA–Protein interactions for RNA: ENST00000543016.1

DDX55-210, Transcript of DEAD-box helicase 55, humanhuman

TSL 3

Gene DDX55, Length 329 nt, Biotype retained intron, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
DDX55-210ENST00000543016 SHC3Q92529 594 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 TMEM176AQ96HP8 235 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 KREMEN1Q96MU8 473 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 PKMYT1Q99640 499 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 NAA15Q9BXJ9 866 aaKnown RBP12.97□□□□□ -0.33
DDX55-210ENST00000543016 RHOBTB2Q9BYZ6 727 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 FBXW11Q9UKB1 542 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 PCDHB5Q9Y5E4 795 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 PCDHB4Q9Y5E5 795 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 PCDHGC5Q9Y5F6 944 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 HCFC2Q9Y5Z7 792 aa12.97□□□□□ -0.33
DDX55-210ENST00000543016 ITIH6Q6UXX5 1313 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 PER2O15055 1255 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 ADAM12O43184 909 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 PAPLNO95428 1278 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 POU2F2P09086 479 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 HNRNPA1P09651 372 aaKnown RBP eCLIP12.96□□□□□ -0.33
DDX55-210ENST00000543016 CCDC172P0C7W6 258 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 VDRP11473 427 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 ACAT1P24752 427 aaKnown RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 PBX1P40424 430 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 MAGEA11P43364 429 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 ZNF132P52740 706 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 RAD23BP54727 409 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 ARPP19P56211 112 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 ADAM15Q13444 863 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 CTC1Q2NKJ3 1217 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 SLC39A12Q504Y0 691 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 IQCEQ6IPM2 695 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 TMEM270Q6UE05 265 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 ADGRD2Q7Z7M1 963 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 RBM23Q86U06 439 aaKnown RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 LRRTM3Q86VH5 581 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 PALB2Q86YC2 1186 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 SPATA2LQ8IUW3 424 aaPredicted RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 KREMEN2Q8NCW0 462 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 CMASQ8NFW8 434 aaPredicted RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 WHAMMQ8TF30 809 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 ELMO3Q96BJ8 720 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 PABPC5Q96DU9 382 aaKnown RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 HEXIM2Q96MH2 286 aaKnown RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 ARID3AQ99856 593 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 XPO4Q9C0E2 1151 aaKnown RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 ELOVL4Q9GZR5 314 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 NUCKS1Q9H1E3 243 aaKnown RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 GANQ9H2C0 597 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 CRTAC1Q9NQ79 661 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 FAM207AQ9NSI2 230 aaPredicted RBP12.96□□□□□ -0.33
DDX55-210ENST00000543016 ZDHHC7Q9NXF8 308 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 CEP72Q9P209 647 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 GTF3C4Q9UKN8 822 aa12.96□□□□□ -0.33
DDX55-210ENST00000543016 UCHL5Q9Y5K5 329 aaKnown RBP eCLIP12.96□□□□□ -0.332e-9■□□□□ 11.2
DDX55-210ENST00000543016 CHD9Q3L8U1 2897 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 MYBPHLA2RUH7 354 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 MTMR11A4FU01 709 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 PRRG1O14668 218 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 NOL4O94818 638 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 CSPG5O95196 566 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 POLR2FP61218 127 aaKnown RBP12.95□□□□□ -0.34
DDX55-210ENST00000543016 RPL10AP62906 217 aaKnown RBP12.95□□□□□ -0.34
DDX55-210ENST00000543016 ADCY1Q08828 1119 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 TRIM14Q14142 442 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 DRAP1Q14919 205 aaPredicted RBP12.95□□□□□ -0.34
DDX55-210ENST00000543016 MEA1Q16626 185 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 ARHGAP17Q68EM7 881 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 CACNA2D4Q7Z3S7 1137 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 ACOT1Q86TX2 421 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 GLYCTKQ8IVS8 523 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 FAM71AQ8IYT1 594 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 SLC4A11Q8NBS3 891 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 RBBP8NLQ8NC74 664 aaPredicted RBP12.95□□□□□ -0.34
DDX55-210ENST00000543016 KAT5Q92993 513 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 PCED1BQ96HM7 432 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 SPAG5Q96R06 1193 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 HNRNPABQ99729 332 aaKnown RBP12.95□□□□□ -0.34
DDX55-210ENST00000543016 TRIM5Q9C035 493 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 SFXN1Q9H9B4 322 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 CYP4F11Q9HBI6 524 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 COG5Q9UP83 839 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 NME7Q9Y5B8 376 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 FHOD1Q9Y613 1164 aa12.95□□□□□ -0.34
DDX55-210ENST00000543016 A0A1W2PQJ5 194 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 F8VZ95 297 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 FOXN3O00409 490 aaPredicted RBP12.94□□□□□ -0.34
DDX55-210ENST00000543016 MED7O43513 233 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 ZMYND10O75800 440 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 OR4Q2P0C623 313 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 HAPLN1P10915 354 aaPredicted RBP12.94□□□□□ -0.34
DDX55-210ENST00000543016 KRT5P13647 590 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 STAT1P42224 750 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 SLC8A3P57103 927 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 PSMC1P62191 440 aaKnown RBP12.94□□□□□ -0.34
DDX55-210ENST00000543016 PLCB2Q00722 1185 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 PTK2Q05397 1052 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 RAPGEF1Q13905 1077 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 ARHGAP44Q17R89 818 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 SGO2Q562F6 1265 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 MDH1BQ5I0G3 518 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 SPECC1LQ69YQ0 1117 aa12.94□□□□□ -0.34
DDX55-210ENST00000543016 GJB7Q6PEY0 223 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 48.7 ms