RNA–Protein interactions for RNA: ENST00000540725.5

SNHG1-213, Transcript of small nucleolar RNA host gene 1, humanhuman

TSL 1 (best) BASIC

Gene SNHG1, Length 1,374 nt, Biotype lincRNA, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SNHG1-213ENST00000540725 PANK4Q9NVE7 773 aa15.21■□□□□ 0.02
SNHG1-213ENST00000540725 THG1LQ9NWX6 298 aaKnown RBP15.21■□□□□ 0.02
SNHG1-213ENST00000540725 ZMYM5Q9UJ78 669 aa15.21■□□□□ 0.02
SNHG1-213ENST00000540725 RAB23Q9ULC3 237 aa15.21■□□□□ 0.02
SNHG1-213ENST00000540725 L1RE1Q9UN81 338 aa15.21■□□□□ 0.02
SNHG1-213ENST00000540725 MORC2Q9Y6X9 1032 aaPredicted RBP15.21■□□□□ 0.02
SNHG1-213ENST00000540725 PTPRDP23468 1912 aa15.21■□□□□ 0.02
SNHG1-213ENST00000540725 ACACBO00763 2458 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 HUS1O60921 280 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 PRPF40AO75400 957 aaKnown RBP15.2■□□□□ 0.02
SNHG1-213ENST00000540725 PAPSS2O95340 614 aaPredicted RBP15.2■□□□□ 0.02
SNHG1-213ENST00000540725 F11P03951 625 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 GPR15P49685 360 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 NLRP12P59046 1061 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 BFSP1Q12934 665 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 SLC39A14Q15043 492 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 LPAL2Q16609 132 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 ITPRIPL2Q3MIP1 535 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 TMEM150AQ86TG1 271 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 LRRC52Q8N7C0 313 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 STKLD1Q8NE28 680 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 NOC3LQ8WTT2 800 aaKnown RBP15.2■□□□□ 0.02
SNHG1-213ENST00000540725 LEO1Q8WVC0 666 aaPredicted RBP15.2■□□□□ 0.02
SNHG1-213ENST00000540725 ITGA11Q9UKX5 1188 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 USP18Q9UMW8 372 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 MTMR6Q9Y217 621 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 EPG5Q9HCE0 2579 aa15.2■□□□□ 0.02
SNHG1-213ENST00000540725 HELZP42694 1942 aaKnown RBP15.19■□□□□ 0.02
SNHG1-213ENST00000540725 CHURC1-FNTBB4DL54 471 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 K7ESF4 209 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 EXTL3O43909 919 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 PRPF6O94906 941 aaKnown RBP15.19■□□□□ 0.02
SNHG1-213ENST00000540725 CSH1P0DML2 217 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 CSH2P0DML3 217 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 TGM1P22735 817 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 AVPR1AP37288 418 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 FNTBP49356 437 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 LMNB2Q03252 620 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 DMWDQ09019 674 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 CCINQ13939 588 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 INTS6LQ5JSJ4 861 aaKnown RBP15.19■□□□□ 0.02
SNHG1-213ENST00000540725 SDHAF4Q5VUM1 108 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 SCARA3Q6AZY7 606 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 LAIR1Q6GTX8 287 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 PRR23BQ6ZRT6 265 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 TMEM86AQ8N2M4 240 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 CSGALNACT2Q8N6G5 542 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 PDILTQ8N807 584 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 MAB21L3Q8N8X9 362 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 CXorf38Q8TB03 319 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 INTS4Q96HW7 963 aaKnown RBP15.19■□□□□ 0.02
SNHG1-213ENST00000540725 ACBD6Q9BR61 282 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 PCIF1Q9H4Z3 704 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 TMEM206Q9H813 350 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 PDE11AQ9HCR9 933 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 PARD6AQ9NPB6 346 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 GKN1Q9NS71 199 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 DDX43Q9NXZ2 648 aaKnown RBP15.19■□□□□ 0.02
SNHG1-213ENST00000540725 MAGED2Q9UNF1 606 aaPredicted RBP15.19■□□□□ 0.02
SNHG1-213ENST00000540725 CCL26Q9Y258 94 aa15.19■□□□□ 0.02
SNHG1-213ENST00000540725 EML5Q05BV3 1969 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 KRT19P08727 400 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 TMEM191BP0C7N4 346 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 ACAT1P24752 427 aaKnown RBP15.18■□□□□ 0.02
SNHG1-213ENST00000540725 DDX6P26196 483 aaKnown RBP eCLIP15.18■□□□□ 0.02
SNHG1-213ENST00000540725 MYL7Q01449 175 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 TXNDC8Q6A555 127 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 OSTM1Q86WC4 334 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 CCDC65Q8IXS2 484 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 SYNPOQ8N3V7 929 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 MRPS31Q92665 395 aaKnown RBP15.18■□□□□ 0.02
SNHG1-213ENST00000540725 USP13Q92995 863 aaPredicted RBP15.18■□□□□ 0.02
SNHG1-213ENST00000540725 PKMYT1Q99640 499 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 FAM83CQ9BQN1 747 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 MTMR12Q9C0I1 747 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 KIF9Q9HAQ2 790 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 ABCB6Q9NP58 842 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 FOXD4L1Q9NU39 408 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 TDP1Q9NUW8 608 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 C2orf42Q9NWW7 574 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 GDAP2Q9NXN4 497 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 SIX4Q9UIU6 781 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 SNX9Q9Y5X1 595 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 MYO16Q9Y6X6 1858 aa15.18■□□□□ 0.02
SNHG1-213ENST00000540725 CACNA1BQ00975 2339 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 PRR5-ARHGAP8B1AHC4 643 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 SDHBP21912 280 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 CYP2F1P24903 491 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 NASPP49321 788 aaPredicted RBP15.17■□□□□ 0.02
SNHG1-213ENST00000540725 RPL10AP62906 217 aaKnown RBP15.17■□□□□ 0.02
SNHG1-213ENST00000540725 RBP5P82980 135 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 ARHGAP8P85298 464 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 SIM2Q14190 667 aaPredicted RBP15.17■□□□□ 0.02
SNHG1-213ENST00000540725 STK38Q15208 465 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 DDR2Q16832 855 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 CCDC142Q17RM4 750 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 LMBRD2Q68DH5 695 aaPredicted RBP15.17■□□□□ 0.02
SNHG1-213ENST00000540725 HEATR6Q6AI08 1181 aaKnown RBP15.17■□□□□ 0.02
SNHG1-213ENST00000540725 MON1AQ86VX9 555 aa15.17■□□□□ 0.02
SNHG1-213ENST00000540725 LONP2Q86WA8 852 aa15.17■□□□□ 0.02
Retrieved 100 of 20,778 RNA–protein pairs in 23 ms