RNA–Protein interactions for RNA: ENST00000540669.1

VPS33A-204, Transcript of VPS33A, CORVET/HOPS core subunit, humanhuman

TSL 3

Gene VPS33A, Length 455 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Cytosol, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS33A-204ENST00000540669 FMO1Q01740 532 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 YWHAHQ04917 246 aaPredicted RBP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 ZNF280DQ6N043 979 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 DSTYKQ6XUX3 929 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 ANKS3Q6ZW76 656 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 SLC47A2Q86VL8 602 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 PPFIBP1Q86W92 1011 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 FUKQ8N0W3 1084 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 B3GALNT2Q8NCR0 500 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 SLC30A5Q8TAD4 765 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 TMEM176AQ96HP8 235 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 B3GALT6Q96L58 329 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 PCMTD1Q96MG8 357 aaPredicted RBP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 MMS19Q96T76 1030 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 SYT15Q9BQS2 421 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 C11orf84Q9BUA3 381 aaPredicted RBP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 LMAN2LQ9H0V9 348 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 NKX2-4Q9H2Z4 354 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 KCNF1Q9H3M0 494 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 TMEM30AQ9NV96 361 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 DDX43Q9NXZ2 648 aaKnown RBP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 CDH9Q9ULB4 789 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 KIAA1257Q9ULG3 409 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 WDR3Q9UNX4 943 aaKnown RBP eCLIP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 R3HCC1Q9Y3T6 440 aaKnown RBP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 TIMM13Q9Y5L4 95 aaPredicted RBP11.23□□□□□ -0.61
VPS33A-204ENST00000540669 NCANO14594 1321 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 OBSL1O75147 1896 aa11.23□□□□□ -0.61
VPS33A-204ENST00000540669 EPOPA6NHQ4 379 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 GRM6O15303 877 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 ADAM12O43184 909 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 CYP1A1P04798 512 aaPredicted RBP11.22□□□□□ -0.61
VPS33A-204ENST00000540669 SERPING1P05155 500 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 PLEKP08567 350 aaPredicted RBP11.22□□□□□ -0.61
VPS33A-204ENST00000540669 VDRP11473 427 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 FOSL2P15408 326 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 GNL1P36915 607 aaPredicted RBP11.22□□□□□ -0.61
VPS33A-204ENST00000540669 CDR2Q01850 454 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 PTK2Q05397 1052 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 ZNF638Q14966 1978 aaKnown RBP11.22□□□□□ -0.61
VPS33A-204ENST00000540669 PSMD5Q16401 504 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 ASIC2Q16515 512 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 CFAP221Q4G0U5 840 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 SFMBT2Q5VUG0 894 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 LCLAT1Q6UWP7 414 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 CCDC186Q7Z3E2 898 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 ZNF571Q7Z3V5 609 aaPredicted RBP11.22□□□□□ -0.61
VPS33A-204ENST00000540669 LRRTM3Q86VH5 581 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 TTC30AQ86WT1 665 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 PALB2Q86YC2 1186 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 SPC24Q8NBT2 197 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 ZNF397Q8NF99 534 aaPredicted RBP11.22□□□□□ -0.61
VPS33A-204ENST00000540669 MYCBPAPQ8TBZ2 947 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 SLC20A1Q8WUM9 679 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 FUBP3Q96I24 572 aaKnown RBP eCLIP11.22□□□□□ -0.61
VPS33A-204ENST00000540669 TNIP3Q96KP6 325 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 FAM161BQ96MY7 647 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 TMEM209Q96SK2 561 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 HNRNPABQ99729 332 aaKnown RBP11.22□□□□□ -0.61
VPS33A-204ENST00000540669 CLSTN3Q9BQT9 956 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 CSNK1G1Q9HCP0 422 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 ABCB6Q9NP58 842 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 TMLHEQ9NVH6 421 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 HSFX1Q9UBD0 423 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 PCDHB4Q9Y5E5 795 aa11.22□□□□□ -0.61
VPS33A-204ENST00000540669 MYBPHLA2RUH7 354 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 A8MXQ7 604 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 H7C4K7 107 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 DDX3XO00571 662 aaKnown RBP eCLIP11.21□□□□□ -0.61
VPS33A-204ENST00000540669 ZNF263O14978 683 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 ATP2C2O75185 946 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 ABLIM3O94929 683 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 URODP06132 367 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 CFHP08603 1231 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 PTPN1P18031 435 aaKnown RBP11.21□□□□□ -0.61
VPS33A-204ENST00000540669 GNA15P30679 374 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 BPIFB4P59827 614 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 ERVFC1P60507 584 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 PSMC1P62191 440 aaKnown RBP11.21□□□□□ -0.61
VPS33A-204ENST00000540669 NOMO3P69849 1222 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 ROR1Q01973 937 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 CENPCQ03188 943 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 GPR17Q13304 367 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 ORC1Q13415 861 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 RAB33AQ14088 237 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 STILQ15468 1287 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 CNGA2Q16280 664 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 SPOUT1Q5T280 376 aaKnown RBP11.21□□□□□ -0.61
VPS33A-204ENST00000540669 PRSS55Q6UWB4 352 aaPredicted RBP11.21□□□□□ -0.61
VPS33A-204ENST00000540669 ACOT1Q86TX2 421 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 FAM35AQ86V20 835 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 LRRC8AQ8IWT6 810 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 VPS52Q8N1B4 723 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 C12orf29Q8N999 325 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 OR6B3Q8NGW1 331 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 ZNF606Q8WXB4 792 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 PCED1BQ96HM7 432 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 PCDHB18PQ96TA0 734 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 CHP1Q99653 195 aa11.21□□□□□ -0.61
VPS33A-204ENST00000540669 LHX5Q9H2C1 402 aa11.21□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 33.1 ms