RNA–Protein interactions for RNA: ENST00000540539.5

CLIP1-214, Transcript of CAP-Gly domain containing linker protein 1, humanhuman

TSL 2 BASIC

Gene CLIP1, Length 2,592 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP1-214ENST00000540539 NIPAL4Q0D2K0 466 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 PLEKHG4Q58EX7 1191 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 PRR23CQ6ZRP0 262 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ZSCAN29Q8IWY8 852 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 MB21D2Q8IYB1 491 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 RASGEF1CQ8N431 466 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 SLC25A41Q8N5S1 370 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 DTX3Q8N9I9 347 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CDK5RAP3Q96JB5 506 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CNOT6LQ96LI5 555 aaKnown RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CCDC138Q96M89 665 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 BTBD9Q96Q07 612 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 RANBP9Q96S59 729 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CIB1Q99828 191 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 DHRS9Q9BPW9 319 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 NOC4LQ9BVI4 516 aaKnown RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 IFT122Q9HBG6 1241 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 GPAMQ9HCL2 828 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 TBC1D14Q9P2M4 693 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 APPL1Q9UKG1 709 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 SIK3Q9Y2K2 1263 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 MYH3P11055 1940 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ABCB11O95342 1321 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 PSMD11O00231 422 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 IRS4O14654 1257 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 RGS13O14921 159 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 FKBP9O95302 570 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 TNFAIP8O95379 198 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CIITAP33076 1130 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 LONP1P36776 959 aaKnown RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 PPP2R2BQ00005 443 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CHRNEQ04844 493 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 SNAPC2Q13487 334 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 IRF5Q13568 498 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 EPHA7Q15375 998 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 STILQ15468 1287 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 RGS21Q2M5E4 152 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 USP41Q3LFD5 358 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 BBS9Q3SYG4 887 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ARSHQ5FYA8 562 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ZNF746Q6NUN9 644 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 TPTE2Q6XPS3 522 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 RALGPS2Q86X27 583 aaPredicted RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CADM3Q8N126 398 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 AHI1Q8N157 1196 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 GDPD5Q8WTR4 605 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ATL1Q8WXF7 558 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 TMIGD2Q96BF3 282 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 SDCCAG3Q96C92 435 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CLPTM1LQ96KA5 538 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 GCNAQ96QF7 691 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 UQCC2Q9BRT2 126 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ZBED2Q9BTP6 218 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 MRPL9Q9BYD2 267 aaKnown RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 NYXQ9GZU5 481 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 KLC2Q9H0B6 622 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 WDR6Q9NNW5 1121 aaKnown RBP9.91□□□□□ -0.82
CLIP1-214ENST00000540539 CYLDQ9NQC7 956 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 IGSF9Q9P2J2 1179 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 KANSL3Q9P2N6 904 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 PI4KBQ9UBF8 816 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 ADAMTS6Q9UKP5 1117 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 IKBKGQ9Y6K9 419 aa9.91□□□□□ -0.82
CLIP1-214ENST00000540539 FAM170AA1A519 330 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 MAGEC1O60732 1142 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 PRKCAP17252 672 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 MUTP22033 750 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 SLC1A1P43005 524 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 METAP2P50579 478 aaKnown RBP eCLIP9.9□□□□□ -0.82
CLIP1-214ENST00000540539 PTENP60484 403 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 HAND2P61296 217 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 GBE1Q04446 702 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 PTK2Q05397 1052 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 NR5A1Q13285 461 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 PPP2R5EQ16537 467 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 KIAA1755Q5JYT7 1200 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 PDXDC2PQ6P474 469 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 CCBE1Q6UXH8 406 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-214ENST00000540539 SRRM1Q8IYB3 904 aaKnown RBP9.9□□□□□ -0.82
CLIP1-214ENST00000540539 CPNE9Q8IYJ1 553 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 CSGALNACT2Q8N6G5 542 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 POU5F2Q8N7G0 328 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 LRRC57Q8N9N7 239 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 TRIM55Q9BYV6 548 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 NPHS2Q9NP85 383 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 ARMCX3Q9UH62 379 aaPredicted RBP9.9□□□□□ -0.82
CLIP1-214ENST00000540539 KCNJ14Q9UNX9 436 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 CHD4Q14839 1912 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 CENPBD1B2RD01 187 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 SNX2O60749 519 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 CIB2O75838 187 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 UFL1O94874 794 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 MMP1P03956 469 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 INHBBP09529 407 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 FDFT1P37268 417 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 FOXO4P98177 505 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 CDK18Q07002 472 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 GK3PQ14409 553 aa9.9□□□□□ -0.82
CLIP1-214ENST00000540539 RRP1BQ14684 758 aaKnown RBP9.9□□□□□ -0.82
CLIP1-214ENST00000540539 WTAPQ15007 396 aa9.9□□□□□ -0.82
Retrieved 100 of 20,778 RNA–protein pairs in 24.1 ms