RNA–Protein interactions for RNA: ENST00000540447.5

YBX3-208, Transcript of Y-box binding protein 3, humanhuman

TSL 2

Gene YBX3, Length 6,393 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
YBX3-208ENST00000540447 BIRC5O15392 142 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 MGRN1O60291 552 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 GABBR2O75899 941 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 KPNA1P52294 538 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 ZNF746Q6NUN9 644 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 RRM2BQ7LG56 351 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 ARHGEF10LQ9HCE6 1279 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 PCDH18Q9HCL0 1135 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 TPRKBQ9Y3C4 175 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 PCDHGA10Q9Y5H3 936 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 A8MUI8 341 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 PTGES3LE9PB15 166 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 CDC40O60508 579 aaKnown RBP eCLIP9.1□□□□□ -0.95
YBX3-208ENST00000540447 NADKO95544 446 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 ANXA13P27216 316 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 CASP4P49662 377 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 KCNK10P57789 538 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 MKRN4PQ13434 485 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 NCF4Q15080 339 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 RBBP7Q16576 425 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 KNOP1Q1ED39 458 aaKnown RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 BROXQ5VW32 411 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 STK32CQ86UX6 486 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 MNTQ99583 582 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 C9orf16Q9BUW7 83 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 TMEM206Q9H813 350 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 SP140LQ9H930 580 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 PNPLA3Q9NST1 481 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 IP6K2Q9UHH9 426 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 UMODL1Q5DID0 1318 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 TRPC5OSA6NMA1 111 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 PLA2G4BP0C869 781 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 POLR2MP0CAP2 368 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 PRKACAP17612 351 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 ATP6V1B2P21281 511 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 AKAP5P24588 427 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 SKIV2L2P42285 1042 aaKnown RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 KCNJ1P48048 391 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 CDK16Q00536 496 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 VAC14Q08AM6 782 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 NFIL3Q16649 462 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 CENPPQ6IPU0 288 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 CCDC28AQ8IWP9 274 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 AMER2Q8N7J2 671 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 SCFD1Q8WVM8 642 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 MED10Q9BTT4 135 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 ETNK2Q9NVF9 386 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 CUEDC1Q9NWM3 386 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 ZSCAN32Q9NX65 697 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 XPO7Q9UIA9 1087 aaKnown RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 ABCC2Q92887 1545 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 F8W031 263 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 TCF3P15923 654 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 BGNP21810 368 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 GALCP54803 685 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 GRIK3Q13003 919 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 NAALADL2Q58DX5 795 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 SLC45A4Q5BKX6 768 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 OR6B2Q6IFH4 312 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 IQCF2Q8IXL9 164 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 PNMA1Q8ND90 353 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 ROGDIQ9GZN7 287 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 SEMA6AQ9H2E6 1030 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 KIAA0232Q92628 1395 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 KRT87PA6NCN2 255 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 IRS4O14654 1257 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 TM9SF1O15321 606 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 KLRC1P26715 233 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 CHKAP35790 457 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 RTP1P59025 263 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 SRP54P61011 504 aaKnown RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 IFI35P80217 286 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 CDC42EP4Q9H3Q1 356 aaKnown RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 CLK4Q9HAZ1 481 aaKnown RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 MAP3K20Q9NYL2 800 aaKnown RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 ARMCX1Q9P291 453 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 CRNNQ9UBG3 495 aaPredicted RBP9.1□□□□□ -0.95
YBX3-208ENST00000540447 DNAJC16Q9Y2G8 782 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 PCDH11YQ9BZA8 1340 aa9.1□□□□□ -0.95
YBX3-208ENST00000540447 HEATR9A2RTY3 570 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 TEX28O15482 410 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 RALBP11234 206 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 RIPOR1Q6ZS17 1223 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 CCDC36Q8IYA8 594 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 HACE1Q8IYU2 909 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 KLHL8Q9P2G9 620 aaPredicted RBP9.09□□□□□ -0.95
YBX3-208ENST00000540447 ZNF624Q9P2J8 865 aaPredicted RBP9.09□□□□□ -0.95
YBX3-208ENST00000540447 ZNF233A6NK53 670 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 KLRF2D3W0D1 207 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 ZNF263O14978 683 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 SPTLC1O15269 473 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 SIN3BO75182 1162 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 SLC1A1P43005 524 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 STARP49675 285 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 GTF2H3Q13889 308 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 XKR9Q5GH70 373 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 ZNF804AQ7Z570 1209 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 TOR1AIP2Q8NFQ8 470 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 HDAC7Q8WUI4 952 aa9.09□□□□□ -0.95
YBX3-208ENST00000540447 PTPRN2Q92932 1015 aa9.09□□□□□ -0.95
Retrieved 100 of 20,778 RNA–protein pairs in 21.4 ms