RNA–Protein interactions for RNA: ENST00000540428.1

CBX3P4-202, Transcript of chromobox 3 pseudogene 4, humanhuman

TSL 2 BASIC

Gene CBX3P4, Length 423 nt, Biotype processed transcript.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CBX3P4-202ENST00000540428 UPF2Q9HAU5 1272 aaKnown RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 HPS4Q9NQG7 708 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 TDP1Q9NUW8 608 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 C2orf42Q9NWW7 574 aa12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 UXTQ9UBK9 157 aaPredicted RBP12.93□□□□□ -0.34
CBX3P4-202ENST00000540428 LOC105378220A0A1B0GUY1 285 aaPredicted RBP12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 PRPF40AO75400 957 aaKnown RBP12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 AKAP3O75969 853 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 ADRB1P08588 477 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 GARTP22102 1010 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 TXLNAP40222 546 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 RPL10AP62906 217 aaKnown RBP12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 ALCAMQ13740 583 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 PDGFRLQ15198 375 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 HEATR6Q6AI08 1181 aaKnown RBP12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 DYMQ7RTS9 669 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 PDCL2Q8N4E4 241 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 FAM160A2Q8N612 972 aaPredicted RBP12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 DDX1Q92499 740 aaKnown RBP12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 EXOC4Q96A65 974 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 TRMT2BQ96GJ1 504 aaKnown RBP12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 MYRFLQ96LU7 910 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 CNTNAP3BQ96NU0 1288 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 ACCSQ96QU6 501 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 CNTNAP3Q9BZ76 1288 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 MRPL44Q9H9J2 332 aaKnown RBP12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 OLFML3Q9NRN5 406 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 TMLHEQ9NVH6 421 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 CCL26Q9Y258 94 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 PCDHB13Q9Y5F0 798 aa12.92□□□□□ -0.34
CBX3P4-202ENST00000540428 EXTL3O43909 919 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 HUS1O60921 280 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 NOL4O94818 638 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 ITGB3P05106 788 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 PDCP20941 246 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 DRD1P21728 446 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 POLR2BP30876 1174 aaKnown RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 LIMK1P53667 647 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 TFAMQ00059 246 aaKnown RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 MYL7Q01449 175 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 FAM160A1Q05DH4 1040 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 KCNA1Q09470 495 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 CFAP221Q4G0U5 840 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 FBXO43Q4G163 708 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 INTS6LQ5JSJ4 861 aaKnown RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 RRAGBQ5VZM2 374 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 TXNDC8Q6A555 127 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 FSTL4Q6MZW2 842 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 CC2D1AQ6P1N0 951 aaPredicted RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 USP49Q70CQ1 688 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 SV2BQ7L1I2 683 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 CAMKK1Q8N5S9 505 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 C1orf127Q8N9H9 656 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 GAB3Q8WWW8 586 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 DNAJC19Q96DA6 116 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 CHFRQ96EP1 664 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 FUBP3Q96I24 572 aaKnown RBP eCLIP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 PKMYT1Q99640 499 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 FAM213AQ9BRX8 229 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 PI4K2AQ9BTU6 479 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 IKZF4Q9H2S9 585 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 EBF3Q9H4W6 596 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 GDAP2Q9NXN4 497 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 DDX43Q9NXZ2 648 aaKnown RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 RBAKQ9NYW8 714 aaPredicted RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 FBXO2Q9UK22 296 aaPredicted RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 ITGA11Q9UKX5 1188 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 L1RE1Q9UN81 338 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 AGAP1Q9UPQ3 857 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 SLC8A2Q9UPR5 921 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 SRPRBQ9Y5M8 271 aaKnown RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 MORC2Q9Y6X9 1032 aaPredicted RBP12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 SCN1AP35498 2009 aa12.91□□□□□ -0.34
CBX3P4-202ENST00000540428 FRMD3A2A2Y4 597 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 OTOL1A6NHN0 477 aaPredicted RBP12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 MYMKA6NI61 221 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 GABRDO14764 452 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 KIAA0391O15091 583 aaKnown RBP12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 RPP40O75818 363 aaKnown RBP12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 GCNT3O95395 438 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 LHX1P48742 406 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 GPR15P49685 360 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 CDR1P51861 262 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 WNT7BP56706 349 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 PPM1JQ5JR12 505 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 TRIM68Q6AZZ1 485 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 PKN3Q6P5Z2 889 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 CCDC73Q6ZRK6 1079 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 CACNA2D4Q7Z3S7 1137 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 TOP6BLQ8N6T0 577 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 CXorf38Q8TB03 319 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 SAAL1Q96ER3 474 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 TMEM206Q9H813 350 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 MAGED2Q9UNF1 606 aaPredicted RBP12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 PCDHGA5Q9Y5G8 931 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 CLIC4Q9Y696 253 aa12.9□□□□□ -0.34
CBX3P4-202ENST00000540428 KIF26AQ9ULI4 1882 aaPredicted RBP12.89□□□□□ -0.35
CBX3P4-202ENST00000540428 VPS37CA5D8V6 355 aaPredicted RBP12.89□□□□□ -0.35
CBX3P4-202ENST00000540428 TADA3O75528 432 aa12.89□□□□□ -0.35
CBX3P4-202ENST00000540428 EPN2O95208 641 aa12.89□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms