RNA–Protein interactions for RNA: ENST00000539950.1

VPS13A-213, Transcript of vacuolar protein sorting 13 homolog A, humanhuman

TSL 3

Gene VPS13A, Length 390 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS13A-213ENST00000539950 DDX17Q92841 729 aaKnown RBP4.57□□□□□ -1.68
VPS13A-213ENST00000539950 REPS1Q96D71 796 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 GTPBP4Q9BZE4 634 aaKnown RBP4.57□□□□□ -1.68
VPS13A-213ENST00000539950 TTYH3Q9C0H2 523 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 PCDH12Q9NPG4 1184 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 PNPOQ9NVS9 261 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 HESX1Q9UBX0 185 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 COL4A3BPQ9Y5P4 624 aa4.57□□□□□ -1.68
VPS13A-213ENST00000539950 H0YIZ8 118 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 IL33O95760 270 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 LATS1O95835 1130 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 FAM163BP0C2L3 166 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 CLCN2P51788 898 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 NKX6-1P78426 367 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-213ENST00000539950 SSBP2P81877 361 aaPredicted RBP4.56□□□□□ -1.68
VPS13A-213ENST00000539950 PLS1Q14651 629 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 PROSER3Q2NL68 480 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 MTX3Q5HYI7 312 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 ZNF618Q5T7W0 954 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 ICE2Q659A1 982 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 ZNF425Q6IV72 752 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 CEP85Q6P2H3 762 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 DTX2Q86UW9 622 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 CELF5Q8N6W0 485 aaKnown RBP4.56□□□□□ -1.68
VPS13A-213ENST00000539950 PCSK9Q8NBP7 692 aaKnown RBP4.56□□□□□ -1.68
VPS13A-213ENST00000539950 NELL2Q99435 816 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 DLL3Q9NYJ7 618 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 SH3BP4Q9P0V3 963 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 SERTAD3Q9UJW9 196 aa4.56□□□□□ -1.68
VPS13A-213ENST00000539950 LUC7L2Q9Y383 392 aaKnown RBP4.56□□□□□ -1.68
VPS13A-213ENST00000539950 H3BUI4 141 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 JTBO76095 146 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 IL6RP08887 468 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-213ENST00000539950 PRR35P0CG20 571 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 CYP2C18P33260 490 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 ALDH9A1P49189 494 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 LONRF3Q496Y0 759 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 BRDTQ58F21 947 aaPredicted RBP4.55□□□□□ -1.68
VPS13A-213ENST00000539950 TREML2Q5T2D2 321 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 TEDDM1Q5T9Z0 273 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 ANKRD16Q6P6B7 361 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 HSPBAP1Q96EW2 488 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 SLC35A4Q96G79 324 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 FAM167AQ96KS9 214 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 SSX2IPQ9Y2D8 614 aa4.55□□□□□ -1.68
VPS13A-213ENST00000539950 ZNF804BA4D1E1 1349 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 TISP43B9A030 160 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 TP73O15350 636 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 SLC16A3O15427 465 aaKnown RBP4.54□□□□□ -1.68
VPS13A-213ENST00000539950 UNC5CO95185 931 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 MPGP29372 298 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 SOX8P57073 446 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 LOXL3P58215 753 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 LILRA4P59901 499 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 CCDC157Q569K6 752 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 EMC10Q5UCC4 262 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 ZNF626Q68DY1 528 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 SFRP4Q6FHJ7 346 aaPredicted RBP4.54□□□□□ -1.68
VPS13A-213ENST00000539950 SLC29A4Q7RTT9 530 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 FANCBQ8NB91 859 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 BRIX1Q8TDN6 353 aaKnown RBP4.54□□□□□ -1.68
VPS13A-213ENST00000539950 TBC1D5Q92609 795 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 MVB12AQ96EY5 273 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 WDR26Q9H7D7 661 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 PCDHA6Q9UN73 950 aa4.54□□□□□ -1.68
VPS13A-213ENST00000539950 SMIM22K7EJ46 135 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 QSOX1O00391 747 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 TLR5O60602 858 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 ALDH2P05091 517 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 FESP07332 822 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 ATXN1LP0C7T5 689 aaKnown RBP4.53□□□□□ -1.68
VPS13A-213ENST00000539950 KELP23276 732 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 EPHB2P29323 1055 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 PXNP49023 591 aaPredicted RBP4.53□□□□□ -1.68
VPS13A-213ENST00000539950 EEFSECP57772 596 aaKnown RBP4.53□□□□□ -1.68
VPS13A-213ENST00000539950 KLF9Q13886 244 aaPredicted RBP4.53□□□□□ -1.68
VPS13A-213ENST00000539950 IQCB1Q15051 598 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 SLC44A4Q53GD3 710 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 AARS2Q5JTZ9 985 aaKnown RBP4.53□□□□□ -1.68
VPS13A-213ENST00000539950 ARHGAP40Q5TG30 622 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 PRAMEF17Q5VTA0 474 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 LAYNQ6UX15 382 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 ZBTB46Q86UZ6 589 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 Q8N9P0 234 aaPredicted RBP4.53□□□□□ -1.68
VPS13A-213ENST00000539950 PLBD2Q8NHP8 589 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 ZCRB1Q8TBF4 217 aaKnown RBP4.53□□□□□ -1.68
VPS13A-213ENST00000539950 ATG4AQ8WYN0 398 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 CHMP4CQ96CF2 233 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 MACROD1Q9BQ69 325 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 SH2D3AQ9BRG2 576 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 BRINP2Q9C0B6 783 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 DUSP22Q9NRW4 184 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 HOMER2Q9NSB8 354 aa4.53□□□□□ -1.68
VPS13A-213ENST00000539950 CYP2D6P10635 497 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 ENGP17813 658 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 AKAP5P24588 427 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 PPIFP30405 207 aaKnown RBP4.52□□□□□ -1.69
VPS13A-213ENST00000539950 CYP4F2P78329 520 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 KHDC1LQ5JSQ8 128 aa4.52□□□□□ -1.69
VPS13A-213ENST00000539950 CEP78Q5JTW2 689 aa4.52□□□□□ -1.69
Retrieved 100 of 20,778 RNA–protein pairs in 27.7 ms