RNA–Protein interactions for RNA: ENST00000537706.5

USP28-205, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 1 (best) BASIC

Gene USP28, Length 1,900 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-205ENST00000537706 LRRC2Q9BYS8 371 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 NRSN2Q9GZP1 204 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 CXCL16Q9H2A7 254 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 ANKEF1Q9NU02 776 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 TOR4AQ9NXH8 423 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 NAP1L2Q9ULW6 460 aaPredicted RBP9.99□□□□□ -0.81
USP28-205ENST00000537706 GTF3C5Q9Y5Q8 519 aaPredicted RBP9.99□□□□□ -0.81
USP28-205ENST00000537706 NUP210Q8TEM1 1887 aaPredicted RBP9.99□□□□□ -0.81
USP28-205ENST00000537706 ZNF462Q96JM2 2506 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 MTMR11A4FU01 709 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 MEI4A8MW99 385 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 ACKR2O00590 384 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 OAZ2O95190 189 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 TDP2O95551 362 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 TLE3Q04726 772 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 FAM160A1Q05DH4 1040 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 MGAT5BQ3V5L5 792 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 CDCA2Q69YH5 1023 aaPredicted RBP9.99□□□□□ -0.81
USP28-205ENST00000537706 NCAPH2Q6IBW4 605 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 DEPTORQ8TB45 409 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 DYDC2Q96IM9 177 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 DRC1Q96MC2 740 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 LGMNQ99538 433 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 IL25Q9H293 177 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 SEPT3Q9UH03 358 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 CCL26Q9Y258 94 aa9.99□□□□□ -0.81
USP28-205ENST00000537706 RBM8AQ9Y5S9 174 aaKnown RBP9.99□□□□□ -0.81
USP28-205ENST00000537706 CILPO75339 1184 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 OR4Q2P0C623 313 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 USP17L7P0C7H9 530 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 NLRP5P59047 1200 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 KCNH2Q12809 1159 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 SERINC3Q13530 473 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 CTTNQ14247 550 aaKnown RBP9.98□□□□□ -0.81
USP28-205ENST00000537706 DHRS13Q6UX07 377 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 NUDT18Q6ZVK8 323 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 SPACA3Q8IXA5 215 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 MCPH1Q8NEM0 835 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 LPIN3Q9BQK8 851 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 TTC12Q9H892 705 aaPredicted RBP9.98□□□□□ -0.81
USP28-205ENST00000537706 WRAP73Q9P2S5 460 aaPredicted RBP9.98□□□□□ -0.81
USP28-205ENST00000537706 SMG1Q96Q15 3661 aaKnown RBP9.98□□□□□ -0.81
USP28-205ENST00000537706 MYO18BQ8IUG5 2567 aa9.98□□□□□ -0.81
USP28-205ENST00000537706 PALM2-AKAP2B1ALY0 433 aaPredicted RBP9.97□□□□□ -0.81
USP28-205ENST00000537706 SGK1O00141 431 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 GRK6P43250 576 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 RCAN1P53805 252 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 SOX4Q06945 474 aaPredicted RBP9.97□□□□□ -0.81
USP28-205ENST00000537706 HDAC1Q13547 482 aaPredicted RBP9.97□□□□□ -0.81
USP28-205ENST00000537706 LY6DQ14210 128 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 EML3Q32P44 896 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 ATF7IP2Q5U623 682 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 DSTYKQ6XUX3 929 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 MON1AQ86VX9 555 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 SLC41A1Q8IVJ1 513 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 IL17RCQ8NAC3 791 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 ATAD1Q8NBU5 361 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 PNKPQ96T60 521 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 TMEM206Q9H813 350 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 IL21Q9HBE4 155 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 RGL1Q9NZL6 768 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 UXTQ9UBK9 157 aaPredicted RBP9.97□□□□□ -0.81
USP28-205ENST00000537706 WNT6Q9Y6F9 365 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 PCDH15Q96QU1 1955 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 TRAV19A0A0A6YYK7 116 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 IGHV1OR15-9A0A0B4J2B8 117 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 BAG4O95429 457 aaKnown RBP9.97□□□□□ -0.81
USP28-205ENST00000537706 HSPA4P34932 840 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 GRM5P41594 1212 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 USP4Q13107 963 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 RTP5Q14D33 572 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 PPP2R5AQ15172 486 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 OVOS1Q6IE37 1185 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 ZNF419Q96HQ0 510 aaPredicted RBP9.97□□□□□ -0.81
USP28-205ENST00000537706 NAP1L4Q99733 375 aaKnown RBP9.97□□□□□ -0.81
USP28-205ENST00000537706 CRISPLD1Q9H336 500 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 FTSJ1Q9UET6 329 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 VAV3Q9UKW4 847 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 CYP8B1Q9UNU6 501 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 WDR3Q9UNX4 943 aaKnown RBP eCLIP9.97□□□□□ -0.81
USP28-205ENST00000537706 PAXBP1Q9Y5B6 917 aa9.97□□□□□ -0.81
USP28-205ENST00000537706 PRPF3O43395 683 aaKnown RBP9.96□□□□□ -0.81
USP28-205ENST00000537706 USO1O60763 962 aaKnown RBP9.96□□□□□ -0.81
USP28-205ENST00000537706 SOAT2O75908 522 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 VNN2O95498 520 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 HNRNPLP14866 589 aaKnown RBP eCLIP9.96□□□□□ -0.81
USP28-205ENST00000537706 KCNE1P15382 129 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 OPRD1P41143 372 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 EIF2DP41214 584 aaKnown RBP9.96□□□□□ -0.81
USP28-205ENST00000537706 TNFRSF4P43489 277 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 PDE6CP51160 858 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 EFNA5P52803 228 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 NLRP12P59046 1061 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 SMARCB1Q12824 385 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 XKR4Q5GH76 650 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 ARHGAP40Q5TG30 622 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 EEF1DP3Q658K8 133 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 TXNDC8Q6A555 127 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 SDE2Q6IQ49 451 aa9.96□□□□□ -0.81
USP28-205ENST00000537706 CHD1LQ86WJ1 897 aa9.96□□□□□ -0.81
Retrieved 100 of 20,778 RNA–protein pairs in 33.5 ms