RNA–Protein interactions for RNA: ENST00000537642.1

USP28-204, Transcript of ubiquitin specific peptidase 28, humanhuman

TSL 3

Gene USP28, Length 732 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP28-204ENST00000537642 GABRR2P28476 465 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 ATICP31939 592 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 AP3M2P53677 418 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 BIRC3Q13489 604 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 VEPH1Q14D04 833 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 WDR72Q3MJ13 1102 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 ZCWPW2Q504Y3 356 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 C1orf220Q5T0J3 134 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 STXBP5Q5T5C0 1151 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 ZSCAN18Q8TBC5 510 aaPredicted RBP15.84■□□□□ 0.13
USP28-204ENST00000537642 TMC2Q8TDI7 906 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 ERCC4Q92889 916 aaPredicted RBP15.84■□□□□ 0.13
USP28-204ENST00000537642 SMARCD2Q92925 531 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 FAM122AQ96E09 287 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 TIGD1Q96MW7 591 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 SYT15Q9BQS2 421 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 TRPV4Q9HBA0 871 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 IL21Q9HBE4 155 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 ZFP14Q9HCL3 533 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 ABCB6Q9NP58 842 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 CRTAC1Q9NQ79 661 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 ARHGEF3Q9NR81 526 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 CDH9Q9ULB4 789 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 FRMD4BQ9Y2L6 1034 aa15.84■□□□□ 0.13
USP28-204ENST00000537642 COL4A3Q01955 1670 aa15.83■□□□□ 0.13
USP28-204ENST00000537642 OBSL1O75147 1896 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 NUP210Q8TEM1 1887 aaPredicted RBP15.83■□□□□ 0.12
USP28-204ENST00000537642 MAPK13O15264 365 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 PI15O43692 258 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 TACC1O75410 805 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 AKAP3O75969 853 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 VNN1O95497 513 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 FGF19O95750 216 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 PDGFRBP09619 1106 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 HMGA1P17096 107 aaKnown RBP15.83■□□□□ 0.12
USP28-204ENST00000537642 AOC1P19801 751 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 PSMC1P62191 440 aaKnown RBP15.83■□□□□ 0.12
USP28-204ENST00000537642 TNNC1P63316 161 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 SDHAF4Q5VUM1 108 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 SPATA2LQ8IUW3 424 aaPredicted RBP15.83■□□□□ 0.12
USP28-204ENST00000537642 STKLD1Q8NE28 680 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 SPATA20Q8TB22 786 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 SYAP1Q96A49 352 aaPredicted RBP15.83■□□□□ 0.12
USP28-204ENST00000537642 ELMO3Q96BJ8 720 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 MKNK1Q9BUB5 465 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 GPR88Q9GZN0 384 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 ATXN3LQ9H3M9 355 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 SLITRK6Q9H5Y7 841 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 VRTNQ9H8Y1 702 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 TBC1D17Q9HA65 648 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 NXF1Q9UBU9 619 aaKnown RBP15.83■□□□□ 0.12
USP28-204ENST00000537642 NCANO14594 1321 aa15.83■□□□□ 0.12
USP28-204ENST00000537642 GREB1Q4ZG55 1949 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 GADD45BO75293 160 aaPredicted RBP15.82■□□□□ 0.12
USP28-204ENST00000537642 FAM163BP0C2L3 166 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 GNL1P36915 607 aaPredicted RBP15.82■□□□□ 0.12
USP28-204ENST00000537642 VIPR2P41587 438 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 PRCPP42785 496 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 CYP4F8P98187 520 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 TCF15Q12870 199 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 NCOA4Q13772 614 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 GRM2Q14416 872 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 TAF12Q16514 161 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 DDR2Q16832 855 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 ZNF699Q32M78 642 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 ZACNQ401N2 412 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 CFAP221Q4G0U5 840 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 VITQ6UXI7 678 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 SV2AQ7L0J3 742 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 MYLPFQ96A32 169 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 FUBP3Q96I24 572 aaKnown RBP eCLIP15.82■□□□□ 0.12
USP28-204ENST00000537642 GSDMAQ96QA5 445 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 PRRX2Q99811 253 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 SNX25Q9H3E2 840 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 RMND1Q9NWS8 449 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 PCDHA5Q9Y5H7 936 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 CACNA1HO95180 2353 aa15.82■□□□□ 0.12
USP28-204ENST00000537642 STK25O00506 426 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 IKBKBO14920 756 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 SMC2O95347 1197 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 RPL13P26373 211 aaKnown RBP15.81■□□□□ 0.12
USP28-204ENST00000537642 CDC25CP30307 473 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 VAMP7P51809 220 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 NUBP1P53384 320 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 STARD6P59095 220 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 RPL10AP62906 217 aaKnown RBP15.81■□□□□ 0.12
USP28-204ENST00000537642 PFKPQ01813 784 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 ADAM9Q13443 819 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 SLC44A4Q53GD3 710 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 COBLL1Q53SF7 1204 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 GPR158Q5T848 1215 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 ZNF658Q5TYW1 1059 aaPredicted RBP15.81■□□□□ 0.12
USP28-204ENST00000537642 PHLDB3Q6NSJ2 640 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 C4orf50Q6ZRC1 276 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 TMEM150AQ86TG1 271 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 FAM186BQ8IYM0 893 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 OR6B3Q8NGW1 331 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 SMARCE1Q969G3 411 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 RSPRY1Q96DX4 576 aa15.81■□□□□ 0.12
USP28-204ENST00000537642 SMYD3Q9H7B4 428 aa15.81■□□□□ 0.12
Retrieved 100 of 20,778 RNA–protein pairs in 21.2 ms