RNA–Protein interactions for RNA: ENST00000535493.5

HDAC4-214, Transcript of histone deacetylase 4, humanhuman

TSL 2

Gene HDAC4, Length 2,743 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HDAC4-214ENST00000535493 SENP7Q9BQF6 1050 aa14.08□□□□□ -0.15
HDAC4-214ENST00000535493 STOML1Q9UBI4 398 aa14.08□□□□□ -0.15
HDAC4-214ENST00000535493 EXOC7Q9UPT5 735 aa14.08□□□□□ -0.15
HDAC4-214ENST00000535493 ZNF541Q9H0D2 1346 aa14.08□□□□□ -0.15
HDAC4-214ENST00000535493 H3BRJ5 948 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 ZNF862O60290 1169 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 ITGBL1O95965 494 aaPredicted RBP14.08□□□□□ -0.16
HDAC4-214ENST00000535493 POTEJP0CG39 1038 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 MAPTP10636 758 aaKnown RBP14.08□□□□□ -0.16
HDAC4-214ENST00000535493 ESRRAP11474 423 aaPredicted RBP14.08□□□□□ -0.16
HDAC4-214ENST00000535493 ACO1P21399 889 aaKnown RBP14.08□□□□□ -0.16
HDAC4-214ENST00000535493 BASP1P80723 227 aaKnown RBP14.08□□□□□ -0.16
HDAC4-214ENST00000535493 LRRC36Q1X8D7 754 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 LRRC74BQ6ZQY2 392 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 RGS9BPQ6ZS82 235 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 DHX30Q7L2E3 1194 aaKnown RBP eCLIP14.08□□□□□ -0.16
HDAC4-214ENST00000535493 PALM2Q8IXS6 379 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 TMEM130Q8N3G9 435 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 OR5B17Q8NGF7 314 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 ACTL9Q8TC94 416 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 CPT1BQ92523 772 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 PTCD3Q96EY7 689 aaKnown RBP14.08□□□□□ -0.16
HDAC4-214ENST00000535493 FAM161BQ96MY7 647 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 TRIM55Q9BYV6 548 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 TMEM39BQ9GZU3 492 aa14.08□□□□□ -0.16
HDAC4-214ENST00000535493 RBBP6Q7Z6E9 1792 aaKnown RBP14.08□□□□□ -0.16
HDAC4-214ENST00000535493 TRAFD1O14545 582 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 LPXNO60711 386 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 USP1O94782 785 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 TMEM63AO94886 807 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 MAP3K6O95382 1288 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 ENO1P06733 434 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 PYGBP11216 843 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 KCNA3P22001 575 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 VCPP55072 806 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 ARL4CP56559 192 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 OTUD4Q01804 1114 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 PTP4A2Q12974 167 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 OASLQ15646 514 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 OR52E8Q6IFG1 317 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 TDRPQ86YL5 185 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 NSL1Q96IY1 281 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 TTC25Q96NG3 672 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 HAPLN2Q9GZV7 340 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 TMX4Q9H1E5 349 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 MRPL47Q9HD33 250 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 GABBR1Q9UBS5 961 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 PCSK1NQ9UHG2 260 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 AGTPBP1Q9UPW5 1226 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 MYH9P35579 1960 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 ZNF536O15090 1300 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 PMM2O15305 246 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 PSMG1O95456 288 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 FESP07332 822 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 BRD2P25440 801 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 HIRAP54198 1017 aaPredicted RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 RPS6P62753 249 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 MORF4L2Q15014 288 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 TAF5Q15542 800 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 VPS72Q15906 364 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 PLEKHA7Q6IQ23 1121 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 CDHR3Q6ZTQ4 885 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 UNC45BQ8IWX7 931 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 FAM71DQ8N9W8 422 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 ZNF606Q8WXB4 792 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 TTC1Q99614 292 aa14.07□□□□□ -0.16
HDAC4-214ENST00000535493 TRIM56Q9BRZ2 755 aaKnown RBP14.07□□□□□ -0.16
HDAC4-214ENST00000535493 CYB561D2O14569 222 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 ATP2A1O14983 1001 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 PLSCR1O15162 318 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 CST8O60676 142 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 BAG2O95816 211 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 GTF2H1P32780 548 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 FAAP100Q0VG06 881 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 ORC1Q13415 861 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 CUL2Q13617 745 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 SMAD1Q15797 465 aaKnown RBP14.06□□□□□ -0.16
HDAC4-214ENST00000535493 EFHC2Q5JST6 749 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 STRIP1Q5VSL9 837 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 ARMC3Q5W041 872 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 ISLR2Q6UXK2 745 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 BANPQ8N9N5 519 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 TMC2Q8TDI7 906 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 FBXO41Q8TF61 875 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 STMN2Q93045 179 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 TMEM143Q96AN5 459 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 FBXL18Q96ME1 805 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 IWS1Q96ST2 819 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 KRT82Q9NSB4 513 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 PARVAQ9NVD7 372 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 KCNG1Q9UIX4 513 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 hCG_1818297A0A087WSY0 165 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 B2RBV5 119 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 E7ENQ6 273 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 KIF3CO14782 793 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 SNUPNO95149 360 aaKnown RBP14.06□□□□□ -0.16
HDAC4-214ENST00000535493 ZWINTO95229 277 aa14.06□□□□□ -0.16
HDAC4-214ENST00000535493 TOP3BO95985 862 aaKnown RBP14.06□□□□□ -0.16
HDAC4-214ENST00000535493 CST3P01034 146 aaPredicted RBP14.06□□□□□ -0.16
HDAC4-214ENST00000535493 LIG4P49917 911 aa14.06□□□□□ -0.16
Retrieved 100 of 20,778 RNA–protein pairs in 24.5 ms