RNA–Protein interactions for RNA: ENST00000525293.5

CD44-216, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 569 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-216ENST00000525293 PLAC9Q5JTB6 97 aa3□□□□□ -1.93
CD44-216ENST00000525293 EXOC8Q8IYI6 725 aa3□□□□□ -1.93
CD44-216ENST00000525293 FAM109AQ8N4B1 249 aa3□□□□□ -1.93
CD44-216ENST00000525293 ZC3H8Q8N5P1 291 aaKnown RBP eCLIP3□□□□□ -1.93
CD44-216ENST00000525293 GPATCH11Q8N954 259 aa3□□□□□ -1.93
CD44-216ENST00000525293 CDK5RAP3Q96JB5 506 aa3□□□□□ -1.93
CD44-216ENST00000525293 MAP3K14Q99558 947 aa3□□□□□ -1.93
CD44-216ENST00000525293 CGRRF1Q99675 332 aa3□□□□□ -1.93
CD44-216ENST00000525293 CHMP4BQ9H444 224 aaKnown RBP3□□□□□ -1.93
CD44-216ENST00000525293 SARS2Q9NP81 518 aaKnown RBP3□□□□□ -1.93
CD44-216ENST00000525293 SERHLQ9NQF3 203 aa3□□□□□ -1.93
CD44-216ENST00000525293 EHD3Q9NZN3 535 aa3□□□□□ -1.93
CD44-216ENST00000525293 HESX1Q9UBX0 185 aa3□□□□□ -1.93
CD44-216ENST00000525293 ADAM21Q9UKJ8 722 aa3□□□□□ -1.93
CD44-216ENST00000525293 WNT6Q9Y6F9 365 aa3□□□□□ -1.93
CD44-216ENST00000525293 AOX1Q06278 1338 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 hCG_2014768A0A024R1R8 64 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 MANSC4A6NHS7 340 aaPredicted RBP2.99□□□□□ -1.93
CD44-216ENST00000525293 GCOM1H8Y6P7 765 aaPredicted RBP2.99□□□□□ -1.93
CD44-216ENST00000525293 DCLK1O15075 740 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 OFD1O75665 1012 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 UNC5CO95185 931 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 FAM163BP0C2L3 166 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 EBLN1P0CF75 366 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 PIM1P11309 404 aaPredicted RBP2.99□□□□□ -1.93
CD44-216ENST00000525293 CDK4P11802 303 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 NDUFB7P17568 137 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 PTMSP20962 102 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 ABCG1P45844 678 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 CCT8P50990 548 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 ZNF134P52741 427 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 ZNF267Q14586 743 aaPredicted RBP2.99□□□□□ -1.93
CD44-216ENST00000525293 LONRF3Q496Y0 759 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 TMEM119Q4V9L6 283 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 AMOTQ4VCS5 1084 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 ATAT1Q5SQI0 421 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 IFIT1BQ5T764 474 aaKnown RBP2.99□□□□□ -1.93
CD44-216ENST00000525293 LAYNQ6UX15 382 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 ZNF551Q7Z340 670 aaPredicted RBP2.99□□□□□ -1.93
CD44-216ENST00000525293 TMTC2Q8N394 836 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 CELF5Q8N6W0 485 aaKnown RBP2.99□□□□□ -1.93
CD44-216ENST00000525293 PLBD2Q8NHP8 589 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 KLHDC4Q8TBB5 520 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 C1GALT1C1Q96EU7 318 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 NELL2Q99435 816 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 NUP88Q99567 741 aaPredicted RBP2.99□□□□□ -1.93
CD44-216ENST00000525293 ARHGEF3Q9NR81 526 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 SERTAD4Q9NUC0 356 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 CPA4Q9UI42 421 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 SERTAD3Q9UJW9 196 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 PADI4Q9UM07 663 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 STXBP5LQ9Y2K9 1186 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 RIPOR2Q9Y4F9 1068 aa2.99□□□□□ -1.93
CD44-216ENST00000525293 PLEKHD1A6NEE1 506 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 CGB1A6NKQ9 187 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 AP1G1O43747 822 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 ABLIM3O94929 683 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 GRPP07492 148 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 HNRNPCP07910 306 aaKnown RBP eCLIP2.98□□□□□ -1.93
CD44-216ENST00000525293 JUPP14923 745 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 DRD4P21917 467 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 MCCP23508 829 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 ALDH9A1P49189 494 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 LILRA4P59901 499 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 SP2Q02086 613 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 IQCB1Q15051 598 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 TTF1Q15361 905 aaPredicted RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 HSP90AB4PQ58FF6 505 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 ARHGAP40Q5TG30 622 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 EMC10Q5UCC4 262 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 ICE2Q659A1 982 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 FCRLBQ6BAA4 426 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 SFRP4Q6FHJ7 346 aaPredicted RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 NOL8Q76FK4 1167 aaKnown RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 PTF1AQ7RTS3 328 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 DTX2Q86UW9 622 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 FTSJ3Q8IY81 847 aaKnown RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 SRRM1Q8IYB3 904 aaKnown RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 DIS3LQ8TF46 1054 aaKnown RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 STAG1Q8WVM7 1258 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 ATRIPQ8WXE1 791 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 DDB2Q92466 427 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 DPF1Q92782 380 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 MTFMTQ96DP5 389 aaKnown RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 LRGUKQ96M69 825 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 RHOBTB2Q9BYZ6 727 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 SLC12A5Q9H2X9 1139 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 WDR26Q9H7D7 661 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 SLC52A1Q9NWF4 448 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 DDX56Q9NY93 547 aaKnown RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 STAP2Q9UGK3 403 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 ZNF180Q9UJW8 692 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 PLEKHM1Q9Y4G2 1056 aa2.98□□□□□ -1.93
CD44-216ENST00000525293 LAS1LQ9Y4W2 734 aaKnown RBP2.98□□□□□ -1.93
CD44-216ENST00000525293 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP2.98□□□□□ -1.93
CD44-216ENST00000525293 WIPF3A6NGB9 483 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 DNAJC9-AS1A6NH13 148 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 TARM1B6A8C7 271 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 MARCH6O60337 910 aa2.97□□□□□ -1.93
CD44-216ENST00000525293 TLR5O60602 858 aa2.97□□□□□ -1.93
Retrieved 100 of 20,778 RNA–protein pairs in 22.6 ms