RNA–Protein interactions for RNA: ENST00000522240.1

CPNE3-205, Transcript of copine 3, humanhuman

TSL 3

Gene CPNE3, Length 446 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPNE3-205ENST00000522240 CD19P15391 556 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 ATP2A2P16615 1042 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 BRD2P25440 801 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 MSNP26038 577 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 PPM1AP35813 382 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 GNL1P36915 607 aaPredicted RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 ALDH7A1P49419 539 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 VAV2P52735 878 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 GFPT1Q06210 699 aaPredicted RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 TAF3Q5VWG9 929 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 ARHGAP17Q68EM7 881 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 FAM117BQ6P1L5 589 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 ALKBH5Q6P6C2 394 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 PDZRN4Q6ZMN7 1036 aaPredicted RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 ZNF662Q6ZS27 426 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 TMCO2Q7Z6W1 182 aaPredicted RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 COLGALT1Q8NBJ5 622 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 ACRBPQ8NEB7 543 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 DESI2Q9BSY9 194 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 DDX43Q9NXZ2 648 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 PUF60Q9UHX1 559 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 CDH9Q9ULB4 789 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 INTUQ9ULD6 942 aa13.88□□□□□ -0.19
CPNE3-205ENST00000522240 WDR3Q9UNX4 943 aaKnown RBP eCLIP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 REXO2Q9Y3B8 237 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 MRPL42Q9Y6G3 142 aaKnown RBP13.88□□□□□ -0.19
CPNE3-205ENST00000522240 I3L4J1 428 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 EFEMP2O95967 443 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 CYP1A1P04798 512 aaPredicted RBP13.87□□□□□ -0.19
CPNE3-205ENST00000522240 CDH5P33151 784 aaPredicted RBP13.87□□□□□ -0.19
CPNE3-205ENST00000522240 MAGEA10P43363 369 aaPredicted RBP13.87□□□□□ -0.19
CPNE3-205ENST00000522240 NOMO3P69849 1222 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 YWHAHQ04917 246 aaPredicted RBP13.87□□□□□ -0.19
CPNE3-205ENST00000522240 CNGA2Q16280 664 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 CLEC16AQ2KHT3 1053 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 CCDC122Q5T0U0 273 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 OVOS1Q6IE37 1185 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 KCNT2Q6UVM3 1135 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 ACOT1Q86TX2 421 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 RNF168Q8IYW5 571 aaPredicted RBP13.87□□□□□ -0.19
CPNE3-205ENST00000522240 TDHQ8IZJ6 230 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 CCAR2Q8N163 923 aaKnown RBP13.87□□□□□ -0.19
CPNE3-205ENST00000522240 THEM5Q8N1Q8 247 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 SLC39A11Q8N1S5 342 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 FIBCD1Q8N539 461 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 B3GALNT2Q8NCR0 500 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 TFAP2BQ92481 460 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 IGSF21Q96ID5 467 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 RAD9AQ99638 391 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 SYT15Q9BQS2 421 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 ZSWIM1Q9BR11 485 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 ACBD6Q9BR61 282 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 OXCT2Q9BYC2 517 aaPredicted RBP13.87□□□□□ -0.19
CPNE3-205ENST00000522240 ZNF518BQ9C0D4 1074 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 ISCUQ9H1K1 167 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 LHX5Q9H2C1 402 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 PDCL3Q9H2J4 239 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 AAASQ9NRG9 546 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 SEPT11Q9NVA2 429 aaKnown RBP13.87□□□□□ -0.19
CPNE3-205ENST00000522240 STK39Q9UEW8 545 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 CEP83Q9Y592 693 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 VWA8A3KMH1 1905 aa13.87□□□□□ -0.19
CPNE3-205ENST00000522240 OAZ2O95190 189 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 CALCAP01258 141 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 UNGP13051 313 aaPredicted RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 FGFR3P22607 806 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 LMO2P25791 158 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 TKTP29401 623 aaKnown RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 CENPCQ03188 943 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 ORC1Q13415 861 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 SPOUT1Q5T280 376 aaKnown RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 LCLAT1Q6UWP7 414 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 KIAA1328Q86T90 577 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 TMEM173Q86WV6 379 aaPredicted RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 PALB2Q86YC2 1186 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 TMEM35BQ8NCS4 154 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 BCL7CQ8WUZ0 217 aaPredicted RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 CLP1Q92989 425 aaKnown RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 HEXIM2Q96MH2 286 aaKnown RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 PCDHB18PQ96TA0 734 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 RTP3Q9BQQ7 232 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 ZBED2Q9BTP6 218 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 TSGA10Q9BZW7 698 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 DPEP3Q9H4B8 488 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 PCDHA13Q9Y5I0 950 aa13.86□□□□□ -0.19
CPNE3-205ENST00000522240 TIMM13Q9Y5L4 95 aaPredicted RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 LAMA2P24043 3122 aaKnown RBP13.86□□□□□ -0.19
CPNE3-205ENST00000522240 ESPNB1AK53 854 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 PJA2O43164 708 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 RTN2O75298 545 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 MICAL2O94851 1124 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 PDGFRBP09619 1106 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 LINC00271P0C7V0 271 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 SETSIPP0DME0 302 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 PTPN1P18031 435 aaKnown RBP13.85□□□□□ -0.19
CPNE3-205ENST00000522240 PBX3P40426 434 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 MAGEA1P43355 309 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 CYP27A1Q02318 531 aa13.85□□□□□ -0.19
CPNE3-205ENST00000522240 MRPL58Q14197 206 aaKnown RBP13.85□□□□□ -0.19
CPNE3-205ENST00000522240 MAPRE1Q15691 268 aaKnown RBP13.85□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 17.2 ms