RNA–Protein interactions for RNA: ENST00000520228.1

SDCBP-208, Transcript of syndecan binding protein, humanhuman

TSL 2

Gene SDCBP, Length 564 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SDCBP-208ENST00000520228 ANLNQ9NQW6 1124 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 JAG2Q9Y219 1238 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 CFAP20Q9Y6A4 193 aaKnown RBP8.38□□□□□ -1.07
SDCBP-208ENST00000520228 ARFGEF2Q9Y6D5 1785 aa8.38□□□□□ -1.07
SDCBP-208ENST00000520228 XDHP47989 1333 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 ZNF541Q9H0D2 1346 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 BRCA1P38398 1863 aaKnown RBP8.37□□□□□ -1.07
SDCBP-208ENST00000520228 UFL1O94874 794 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 UBTFL1P0CB47 393 aaPredicted RBP8.37□□□□□ -1.07
SDCBP-208ENST00000520228 TRIM27P14373 513 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 MSX2P35548 267 aaPredicted RBP8.37□□□□□ -1.07
SDCBP-208ENST00000520228 FLT3LGP49771 235 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 CDC42EP1Q00587 391 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 FAM47AQ5JRC9 791 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 ZKSCAN2Q63HK3 967 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 C16orf71Q8IYS4 520 aaPredicted RBP8.37□□□□□ -1.07
SDCBP-208ENST00000520228 MYO1HQ8N1T3 1032 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 NSUN6Q8TEA1 469 aaKnown RBP8.37□□□□□ -1.07
SDCBP-208ENST00000520228 CASKIN2Q8WXE0 1202 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 ARL8AQ96BM9 186 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 SAMD11Q96NU1 681 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 ANKRD2Q9GZV1 360 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 BICC1Q9H694 974 aaKnown RBP8.37□□□□□ -1.07
SDCBP-208ENST00000520228 LDAHQ9H6V9 325 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 HDAC5Q9UQL6 1122 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 DLEC1Q9Y238 1755 aa8.37□□□□□ -1.07
SDCBP-208ENST00000520228 ARFGEF1Q9Y6D6 1849 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 ANKRD36CQ5JPF3 1778 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 ZNF623O75123 536 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 PCSK1P29120 753 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 PTPN7P35236 360 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 C1QTNF8P60827 252 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 MTM1Q13496 603 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 RABL6Q3YEC7 729 aaPredicted RBP8.36□□□□□ -1.07
SDCBP-208ENST00000520228 MFSD5Q6N075 450 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 LDHAL6AQ6ZMR3 332 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 DOK3Q7L591 496 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 GPC2Q8N158 579 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 ANKRD44Q8N8A2 993 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 FBXO18Q8NFZ0 1043 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 SLC35G2Q8TBE7 412 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 CCHCR1Q8TD31 782 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 MRGPRX4Q96LA9 322 aa8.36□□□□□ -1.07
SDCBP-208ENST00000520228 LSM14BQ9BX40 385 aaKnown RBP8.36□□□□□ -1.07
SDCBP-208ENST00000520228 HECAQ9UBI9 543 aaPredicted RBP8.36□□□□□ -1.07
SDCBP-208ENST00000520228 AJAP1Q9UKB5 411 aaPredicted RBP8.36□□□□□ -1.07
SDCBP-208ENST00000520228 DTNBO60941 627 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 OFD1O75665 1012 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 TOMM70O94826 608 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 GNAI3P08754 354 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 FPR1P21462 350 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 KCNJ4P48050 445 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 CHRNDQ07001 517 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 CXCL9Q07325 125 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 ZNF267Q14586 743 aaPredicted RBP8.35□□□□□ -1.07
SDCBP-208ENST00000520228 TNIP1Q15025 636 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 MLC1Q15049 377 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 IFIT1BQ5T764 474 aaKnown RBP8.35□□□□□ -1.07
SDCBP-208ENST00000520228 SPTY2D1Q68D10 685 aaPredicted RBP8.35□□□□□ -1.07
SDCBP-208ENST00000520228 PPP4R3AQ6IN85 833 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 MAMDC4Q6UXC1 1216 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 GPRIN1Q7Z2K8 1008 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 APBB1IPQ7Z5R6 666 aaPredicted RBP8.35□□□□□ -1.07
SDCBP-208ENST00000520228 FTSJ3Q8IY81 847 aaKnown RBP8.35□□□□□ -1.07
SDCBP-208ENST00000520228 IFI44Q8TCB0 444 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 MVB12AQ96EY5 273 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 MEIS3Q99687 375 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 SENP6Q9GZR1 1112 aaPredicted RBP8.35□□□□□ -1.07
SDCBP-208ENST00000520228 DBNDD1Q9H9R9 158 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 CNNM1Q9NRU3 951 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 TDP1Q9NUW8 608 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 TNNQ9UQP3 1299 aa8.35□□□□□ -1.07
SDCBP-208ENST00000520228 AP1G1O43747 822 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 MARCH6O60337 910 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 HSPA6P17066 643 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 DDCP20711 480 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 COMTP21964 271 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 PGS1Q32NB8 556 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 AFMIDQ63HM1 303 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 ANKS6Q68DC2 871 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 OTUD7BQ6GQQ9 843 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 TTC7BQ86TV6 843 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 D2HGDHQ8N465 521 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 TMEM57Q8N5G2 664 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 TTC9BQ8N6N2 239 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 STON2Q8WXE9 905 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 CLIP3Q96DZ5 547 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 TAAR9Q96RI9 348 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 TMEM140Q9NV12 185 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 HACL1Q9UJ83 578 aa8.34□□□□□ -1.07
SDCBP-208ENST00000520228 LRRFIP2Q9Y608 721 aaKnown RBP8.34□□□□□ -1.07
SDCBP-208ENST00000520228 ZNF804BA4D1E1 1349 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 YDJCA8MPS7 323 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 CXorf49A8MYA2 514 aaPredicted RBP8.33□□□□□ -1.08
SDCBP-208ENST00000520228 PLIN1O60240 522 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 ECE2O60344 883 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 FOXD2O60548 495 aaPredicted RBP8.33□□□□□ -1.08
SDCBP-208ENST00000520228 GPR32O75388 356 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 TAF5LO75529 589 aa8.33□□□□□ -1.08
SDCBP-208ENST00000520228 GMPSP49915 693 aaPredicted RBP8.33□□□□□ -1.08
Retrieved 100 of 20,778 RNA–protein pairs in 44.5 ms